PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926493
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 423aa    MW: 47870.9 Da    PI: 8.8615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926493genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407.1e-13221061798
                E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                v+p ++ +++   +++s+ +tl+   ++++W  k+ +rk +++  yvl++ W eFvk+n + +gD+++F+ + g  ++f  +v+++r
  462926493  22 VIPIHYGDAYF--PRKSQIVTLQRrGKNKEWHPKFDIRKDGSSykYVLSGSWLEFVKDNCVHQGDICIFQPMkGVdETFLATVHLLR 106
                78888888886..446667888884556***99997755555455*************************65365677767777666 PP
2B346.56.5e-152273101297
                HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                +++ +v+  ++a+e+  +    e++ + ++  + r+W+vk+  + +s++ + t GW +Fv++n+L + D+++F+l+++ ++ ++ v ++
  462926493 227 SLDTIVFDTPYATEYlpD---GEQTLILMRIGKKRKWKVKM--NLRSDMQIVTLGWHKFVDDNHLGVEDIFLFQLMKNeRRLTMIVYII 310
                567788889999999543...2344566666999*******..99999*9**************************9878888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.5746108IPR003340B3 DNA binding domain
SMARTSM010190.00512108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-122193IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-132194IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-1322106No hitNo description
PfamPF023622.4E-1122106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14206310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-15207310IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-9212308No hitNo description
PROSITE profilePS5086310.644216313IPR003340B3 DNA binding domain
SMARTSM010194.0E-5219313IPR003340B3 DNA binding domain
PfamPF023624.3E-13227310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSGNLRQSIL SASKPTVLLA QVIPIHYGDA YFPRKSQIVT LQRRGKNKEW HPKFDIRKDG  60
SSYKYVLSGS WLEFVKDNCV HQGDICIFQP MKGVDETFLA TVHLLRESKA YSLGGRTRKK  120
ATGGNRVRSC DESRPRANTT ATIPVKEESF EGENTLYSRC NNGHRAHQRP LESDESQVHS  180
KHLYMLSGQT HLTAEQMNNV EEKVHSIQSE VPIYVAKMNK IIVGANSLDT IVFDTPYATE  240
YLPDGEQTLI LMRIGKKRKW KVKMNLRSDM QIVTLGWHKF VDDNHLGVED IFLFQLMKNE  300
RRLTMIVYII HHGEKPPLLD CYGCEVKQES DVYDSEGPSE LSLYMVLGGT GLTPAQEKIV  360
QEKVMDIQSE MPVFVATMNK NIIGGKGIYA LDFSTLKGGP YLPGGKQTLT LHRIGWHSTI  420
INV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172