PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926382
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 412aa    MW: 44551 Da    PI: 10.0676
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926382genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.86.8e-19104193186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer....spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +Wt++ +  L++a++++ e+l+rg+l++ +We+v++ + +++ ++    s +qCk+k++nl+kryk + ++  +  ++++s++p+f+++e
  462926382 104 EWTDSAISSLLDAYTDRFEQLNRGNLRGRDWEDVAASVTDGQGKVsgvkSVEQCKNKIDNLKKRYKVECQRLAGSGAGAVSHWPWFKKME 193
                5*************************************55555441112789**************998888888899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-20102195No hitNo description
Gene3DG3DSA:3.40.1160.108.2E-34245384IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.31E-26250384IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHPAPP PPPPTAQPCR ERRRRRLIRA EETNHHAERA KAALPAKRGR  60
ERAEEFSSDG GEYSSYINSS GGGGKKGRGS GGGGASDYRK DREEWTDSAI SSLLDAYTDR  120
FEQLNRGNLR GRDWEDVAAS VTDGQGKVSG VKSVEQCKNK IDNLKKRYKV ECQRLAGSGA  180
GAVSHWPWFK KMEQIVGNSS ASPASSKPLV ASDDDKARPQ QQHGSKRYSI SSTAPPAAVA  240
ASRANPFSNP KWKRVLLKIG GTALAGEAPQ NVDPKVAIVV GGRNIFCGDN WAAATGTDRA  300
STFPIGMMAS VMNSVLLQAS LEKIGVETRV QTALMMQEVA EPYIRRRAIR HLEKGRVVIF  360
GGIGAGIGNP LFTTDTAAAL RASENYSYLI STRQAFSKRD LSCSFCRHNT IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-362443841155Uridylate kinase
3ek5_B7e-362443841155Uridylate kinase
3ek5_C7e-362443841155Uridylate kinase
3ek5_D7e-362443841155Uridylate kinase
3ek5_E7e-362443841155Uridylate kinase
3ek5_F7e-362443841155Uridylate kinase
3ek6_A7e-362443841155Uridylate kinase
3ek6_B7e-362443841155Uridylate kinase
3ek6_C7e-362443841155Uridylate kinase
3ek6_D7e-362443841155Uridylate kinase
3ek6_E7e-362443841155Uridylate kinase
3ek6_F7e-362443841155Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926382
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446396.10.0uncharacterized protein LOC8072072
TrEMBLA0A059Q0220.0A0A059Q022_9POAL; Aspartate/glutamate/uridylate kinase
TrEMBLA0A1Z5RCP20.0A0A1Z5RCP2_SORBI; Uncharacterized protein
STRINGSb06g015280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-102Trihelix family protein