PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462926338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 97aa MW: 10654.5 Da PI: 10.2219 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 133.9 | 4.1e-42 | 28 | 97 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvs+kklkreklkqGv++PGe 462926338 28 NVVIEEVnKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSRKKLKREKLKQGVSAPGE 97 56778888*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 4.0E-10 | 29 | 97 | No hit | No description |
Pfam | PF04689 | 7.5E-39 | 33 | 97 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 97 aa Download sequence Send to blast |
MIPDEQRAVF GSDQATAMAE QFADSASNVV IEEVNKGLNP GMIVLLVVAS FLLLFFVGNY 60 ALYVYAQKTL PPKKKKPVSR KKLKREKLKQ GVSAPGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462926338 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP091981 | 2e-84 | FP091981.1 Phyllostachys edulis cDNA clone: bbasst002p11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633609.1 | 3e-32 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 3e-33 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0D3FVJ5 | 9e-32 | A0A0D3FVJ5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZKE5 | 5e-32 | A0A0D9ZKE5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H0D2 | 5e-32 | A0A0E0H0D2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P8S3 | 5e-32 | A0A0E0P8S3_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G11330.1 | 9e-33 | (Oryza glumipatula) | ||||
STRING | ORUFI04G12840.1 | 9e-33 | (Oryza rufipogon) | ||||
STRING | ONIVA04G09610.1 | 9e-33 | (Oryza nivara) | ||||
STRING | OBART04G11650.1 | 1e-32 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Publications ? help Back to Top | |||
---|---|---|---|
|