PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462926126

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

BBR-BPC

Protein Properties

Length: 406aa MW: 45014.1 Da PI: 9.5965

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462926126	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	388.3	1.1e-118	98	406	10	301
GAGA_bind 10 nkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtk 106 + ++ p+++lk++ +++++++++e+d++irer++al+ekkaa+aerd af qrd+a+aern+a+verdn+l+al+l++++ + +++ ++ l+gtk 462926126 98 HFSWMMPQRQLKDHHSMNILALMNEKDSAIRERDHALAEKKAAIAERDAAFSQRDTAMAERNAAIVERDNALAALELARTNGFnmnNGNGFHQGPLNGTK 197 455666889****************************************************************9988875555588899999** PP GAGA_bind 107 sidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader......skaekk 192 +i++++qls+ ql+ds+++ +re+++lea+pi++aa ++ + kk++k++++++p+++ + +k+kk+++++k+ +++ e+ sk+e+k 462926126 198 NIHHHDQLSHvqsspLQLADSPYDhVREMHILEAYPISTAAGSVGKGKKPRKNNSQASPLKRPSGvlRKTKKPTADWKNGGISGVGEDasrasvSKNEWK 297 ***999999999****9*********************************999888888899999999888877445778889* PP GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292 ++dl+ln+vs+De+t+P+P+CsCtG lrqCYkWGnGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkH 462926126 298 DQDLGLNQVSYDETTMPAPACSCTGELRQCYKWGNGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKH 397 ************************************************************************************************ PP GAGA_bind 293 Gtnkfvtir 301 Gtn+++tir 462926126 398 GTNRYITIR 406 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.0E-147	88	406	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.3E-95	96	406	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
LHLIPKLTKS DAWECCLAKA AFPGSEPAKP SIRDRCMYEL HLRYCMESVA AGDRVVEDSP 60 PSRRTKHTFV TYGALAIHIP RAIIVQHDNL DSLPSTKHFS WMMPQRQLKD HHSMNILALM 120 NEKDSAIRER DHALAEKKAA IAERDAAFSQ RDTAMAERNA AIVERDNALA ALELARTNGF 180 NMNNGNGFHQ GPLNGTKNIH HHDQLSHVQS SPLQLADSPY DHVREMHILE AYPISTAAGS 240 VGKGKKPRKN NSQASPLKRP SGVLRKTKKP TADWKNGGIS GVGEDASRAS VSKNEWKDQD 300 LGLNQVSYDE TTMPAPACSC TGELRQCYKW GNGGWQSSCC TMSISMYPLP VMPNRRHARM 360 GGRKMSGGAF TKLLSRLAAE GHDLSTPVDL KDHWAKHGTN RYITIR

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

LHLIPKLTKS DAWECCLAKA AFPGSEPAKP SIRDRCMYEL HLRYCMESVA AGDRVVEDSP  60
PSRRTKHTFV TYGALAIHIP RAIIVQHDNL DSLPSTKHFS WMMPQRQLKD HHSMNILALM  120
NEKDSAIRER DHALAEKKAA IAERDAAFSQ RDTAMAERNA AIVERDNALA ALELARTNGF  180
NMNNGNGFHQ GPLNGTKNIH HHDQLSHVQS SPLQLADSPY DHVREMHILE AYPISTAAGS  240
VGKGKKPRKN NSQASPLKRP SGVLRKTKKP TADWKNGGIS GVGEDASRAS VSKNEWKDQD  300
LGLNQVSYDE TTMPAPACSC TGELRQCYKW GNGGWQSSCC TMSISMYPLP VMPNRRHARM  360
GGRKMSGGAF TKLLSRLAAE GHDLSTPVDL KDHWAKHGTN RYITIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462926126

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141822.1	0.0	BBR/BPC transcription factor
Refseq	XP_008658294.1	0.0	BBR/BPC transcription factor isoform X1
Swissprot	Q5VSA8	0.0	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	B4FYC0	0.0	B4FYC0_MAIZE; BBR/BPC transcription factor
STRING	GRMZM2G118690_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-94	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]