PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925604
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 444aa    MW: 51055 Da    PI: 6.212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925604genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.8e-51201491128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 
                lp+GfrF+Ptdee++++yL++kv ++++++  +i e+di+k+ePw+Lp k+k +ekewyf++ +d+ky+tg r+nrat++gyWkatgkd+ + +  +++ 
  462925604  20 LPRGFRFRPTDEEIITYYLTNKVLDENFTA-IAIGETDINKSEPWELPYKAKMGEKEWYFYCLKDRKYPTGFRANRATEAGYWKATGKDRGIDCGASSVl 118
                799************************999.88***************99999***************************************99644446 PP

        NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128
                   g+kktLvfykgrap+g+ktdWvmheyr+
  462925604 119 vlLGMKKTLVFYKGRAPNGVKTDWVMHEYRI 149
                779**************************97 PP
2NAM146.71.2e-451873071128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lp+GfrF+Ptdee++++yL++kv ++++++  +i e+di+k+ePw+Lp k+k +ekewyf++ +d+ky+tg r+nrat++gyWkat k++      g+ v
  462925604 187 LPRGFRFRPTDEEIITYYLTNKVLDENFTA-IAIGETDINKSEPWELPYKAKMGEKEWYFYCLKDRKYPTGFRANRATEAGYWKATAKTE------GSIV 279
                799************************999.88***************99999*********************************9943......4556 PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                   ktLvfykgrap+g+ktdWvmheyrl
  462925604 280 VHLKTLVFYKGRAPNGVKTDWVMHEYRL 307
                7789**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5315155IPR003441NAC domain
PROSITE profilePS5100549.3420172IPR003441NAC domain
PfamPF023658.0E-2621149IPR003441NAC domain
SuperFamilySSF1019412.35E-53181323IPR003441NAC domain
PROSITE profilePS5100545.721187323IPR003441NAC domain
PfamPF023651.9E-23188307IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEDYEQLQQW RSGGADGLEL PRGFRFRPTD EEIITYYLTN KVLDENFTAI AIGETDINKS  60
EPWELPYKAK MGEKEWYFYC LKDRKYPTGF RANRATEAGY WKATGKDRGI DCGASSVLVL  120
LGMKKTLVFY KGRAPNGVKT DWVMHEYRID GKGQVPCPAA SSKSNTKKPY YEQLQQWRSG  180
GADGLELPRG FRFRPTDEEI ITYYLTNKVL DENFTAIAIG ETDINKSEPW ELPYKAKMGE  240
KEWYFYCLKD RKYPTGFRAN RATEAGYWKA TAKTEGSIVV HLKTLVFYKG RAPNGVKTDW  300
VMHEYRLNSK RKEEWVVCRV FQKSSCARKE SEFTLVLALS SYMPMDDGGE DLSCMSFPMP  360
TQFPVEIEDF TDYSIELYSL LDGPFASFYS TDDMGSPVLH PLLPVIGMSG IGLQMNNDLF  420
WEPDGYIQSN VILPTSRERN NKRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441832915171NO APICAL MERISTEM PROTEIN
1ut4_B1e-441832915171NO APICAL MERISTEM PROTEIN
1ut7_A1e-441832915171NO APICAL MERISTEM PROTEIN
1ut7_B1e-441832915171NO APICAL MERISTEM PROTEIN
3swm_A1e-441832918174NAC domain-containing protein 19
3swm_B1e-441832918174NAC domain-containing protein 19
3swm_C1e-441832918174NAC domain-containing protein 19
3swm_D1e-441832918174NAC domain-containing protein 19
3swp_A1e-441832918174NAC domain-containing protein 19
3swp_B1e-441832918174NAC domain-containing protein 19
3swp_C1e-441832918174NAC domain-containing protein 19
3swp_D1e-441832918174NAC domain-containing protein 19
4dul_A1e-441832915171NAC domain-containing protein 19
4dul_B1e-441832915171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925604
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679478.19e-73protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ27e-65NC100_ARATH; NAC domain-containing protein 100
TrEMBLK3ZUK34e-71K3ZUK3_SETIT; Uncharacterized protein
STRINGOMERI12G00530.12e-95(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-67NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]