PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462925580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 46439.9 Da PI: 6.5573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 139 | 187 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE++RRd++N++f eL + l + + K +Ka+iL A++ + +L 462925580 139 TSKACREKQRRDKLNDRFVELGSTLEPG---KPVKADKAAILSDATRMVIQL 187 67889**********************9...99*************988777 PP | |||||||
2 | HLH | 31.7 | 2.8e-10 | 264 | 312 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE++RRd++N++f eL + l + + K +Ka+iL A++ + +L 462925580 264 TSKACREKQRRDKLNDRFVELGSTLEPG---KPVKADKAAILSDATRMVIQL 312 67889**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-13 | 134 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.557 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.28E-7 | 137 | 192 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 139 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-13 | 139 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-13 | 259 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.557 | 261 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.28E-7 | 262 | 317 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 264 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-13 | 264 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 267 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.64E-5 | 330 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 17 | 338 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-6 | 352 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MSLPPADGGG GGDDWFLDCG ILDDLPAAAC GAFPWDASPS SSNPRGCFCS IISEFCTLAR 60 CLLLVDEVVL MFPGPGYGGW NGWGLDYQSY GNENYEISIF WDVLLSVEVG NYVNTTDVFK 120 EPSSNKRLRP GSSGSGRPTS KACREKQRRD KLNDRFVELG STLEPGKPVK ADKAAILSDA 180 TRMVIQLRAE AQQLKDTNDS LEEKIKELKF LGIDSVNTAF CIAAMRIVPD YVEVGNYVNT 240 TDVFKEPSSN KRLRPGSSGS GRPTSKACRE KQRRDKLNDR FVELGSTLEP GKPVKADKAA 300 ILSDATRMVI QLRAEAQQLK DTNDSLEEKI KELKRVFHVV GPLFRLFIVS ARFVELGSTL 360 EPGKPVKADK AAILSDATRM VIQLRAEAQQ LKDTNDSLEE KIKELKAEKD ELREEKHKLK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462925580 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972892.1 | 2e-63 | transcription factor ILR3 | ||||
Swissprot | Q9C682 | 7e-31 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A0A9E9E6 | 8e-69 | A0A0A9E9E6_ARUDO; Uncharacterized protein | ||||
STRING | Si014339m | 8e-63 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-32 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|