PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925488
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family DBB
Protein Properties Length: 363aa    MW: 38993.3 Da    PI: 4.6537
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925488genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ ++  e++  C  ++  lC  C +e H        H++vpl
  462925488  4 QCNACGAAEARVLCCADEAALCGACDEEVHAAnklagkHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box29.51.6e-095991335
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                +kC+ ++e    +fC +++ llC+dC +++H 
  462925488 59 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 91
               689***************************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.509147IPR000315B-box-type zinc finger
CDDcd000211.13E-8347No hitNo description
PfamPF006431.3E-5447IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.98757104IPR000315B-box-type zinc finger
SMARTSM003362.3E-1657104IPR000315B-box-type zinc finger
PfamPF006431.9E-75999IPR000315B-box-type zinc finger
CDDcd000211.58E-1060104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCGACDE EVHAANKLAG KHQRVPLLQD DTPAATSAVP  60
KCDICQEASG YFFCLEDRAL LCRDCDVAIH TVNPFVSAHQ RFLLTGVQVA LDPADPVPPV  120
ADKRANADGG SVYLPTKNMS GSNPTVPSSG EGSDFMPGRN VINGNYSRKN HVPTVSTGEV  180
KWTMNNSTIR SLELRPEYLS DESPTLVQSG KATAAFSNQV NKDNDPAYNL PLSGGNGSES  240
LPDWHVDEFF SSSEFGPNLS FTEHCSPKGD NTKLGSAGGS PQCRLAEGFV AEELLDLVPR  300
FDADESWTVP EVPSPPTASG LYWQGNFHYP AYDSTIFVPE VSSLQSSQNN LAVPGGFKRR  360
RQF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352331e-142BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds.
GenBankKJ7285311e-142KJ728531.1 Zea mays clone pUT6836 orphans transcription factor (Orphan243) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811997.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7E2Y00.0A0A2T7E2Y0_9POAL; Uncharacterized protein
STRINGPavir.J07875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-57light-regulated zinc finger protein 1