PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925416
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Whirly
Protein Properties Length: 92aa    MW: 10216.9 Da    PI: 9.5704
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925416genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly66.93.6e-21761155
     Whirly  1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf 55
               ++yk+kaal+ +++ p+f+ ldsg+ k+ ++G +ll++a+a+a+r+ydW++kq+ 
  462925416  7 GIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGCVLLQFAPAVATRQYDWSRKQNR 61
               79**************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085364.0E-20860IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.102.5E-22859IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.96E-26886IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.103.3E-46086IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MARRMGGIYK GKAALSFDPR PPQFVPLDSG AYKVAKEGCV LLQFAPAVAT RQYDWSRKQN  60
RLLNIDESIY IPISKGEFAV IVSTLNNCDL PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-2286744103p24: plant transcriptional regulator PBF-2
1l3a_B2e-2286744103p24: plant transcriptional regulator PBF-2
1l3a_C2e-2286744103p24: plant transcriptional regulator PBF-2
1l3a_D2e-2286744103p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361948e-47CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964538.17e-40single-stranded DNA-binding protein WHY1, chloroplastic isoform X2
SwissprotB2LXS78e-28WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2T8JET66e-36A0A2T8JET6_9POAL; Uncharacterized protein
STRINGORGLA06G0029900.16e-30(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-23ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]