PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462924773

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

AP2

Protein Properties

Length: 310aa MW: 34417.6 Da PI: 9.275

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462924773	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.8e-18	104	153	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g 462924773 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 153 78*****************......55**********************997 PP
2	AP2	37.3	6.7e-12	196	246	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+++k g+W+++I +k+++lg ++t+ eAa+ +++a+ + +g 462924773 196 SRFRGVTQHK-CGKWESRIGQlM----GKKYVYLGLYDTEMEAAQVYDKAAIRCFG 246 789*****.79976633....25******77********98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.54E-16	104	162	IPR016177	DNA-binding domain
Pfam	PF00847	5.1E-10	104	153	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.662	105	161	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-31	105	167	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-17	105	161	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.21E-16	196	255	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-6	196	244	IPR001471	AP2/ERF domain
CDD	cd00018	4.80E-23	196	256	No hit	No description
SMART	SM00380	2.8E-31	197	260	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-15	197	254	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.592	197	254	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-5	198	209	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-5	236	256	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAATKRAFHG VDDGIGHDDE LQGARPEEGS RMIFGFPVPG PHSRPAAVTQ QFFPATVAVG 60 TPAPAPQHQQ PAMEQCHAVA AVAADPWARP ALRKSRRGPR SRSSQYRGVT FYRRTGRWES 120 HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVSADINF TLDDYKDDIK KMKNFSKEEF 180 VQVLRRQGAG FVRGSSRFRG VTQHKCGKWE SRIGQLMGKK YVYLGLYDTE MEAAQVYDKA 240 AIRCFGKEAV TNFDPQTYDN ELQLQYGELD LELSLGIAGG GRGTVADEVF NSAPGKQRTS 300 LTVHQHHQQC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462924773

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040346	1e-162	BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBank	KJ726941	1e-162	KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810716.1	1e-136	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Swissprot	A0A0N7KMH0	1e-133	AP24_ORYSJ; APETALA2-like protein 4
TrEMBL	A0A3L6RYR2	1e-143	A0A3L6RYR2_PANMI; Uncharacterized protein
STRING	LPERR06G18460.1	1e-137	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11821	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	1e-82	AP2 family protein

Publications ? help Back to Top
Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]