PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462923965

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HRT-like

Protein Properties

Length: 514aa MW: 57023.2 Da PI: 9.8472

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462923965	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.3	5.4e-18	302	332	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledGs C ++Pv+gRKRC HKG+Ri 462923965 302 VCGVVLEDGSSCLEEPVQGRKRCNLHKGRRI 332 7*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	1.2E-4	72	174	IPR000305	GIY-YIG nuclease superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MPAATAAVRL KREDCPRTKH DSLFSPWKVL VGPSDWEDHA AGKEGVQRYR TRNLPDNFPG 60 LYELGVAAAS DEGLRARRRD SRSVVVVYLG QADSVRARLQ QYGRSGSHLD TGNSAGKNEV 120 NALATGTGLF REVFARGYSV VFRCALMDNK QEAEKTEAQL LRVFDYAWNK LQNGACRREE 180 VLLKLEQISH RSSLLSRVRH MKQTIFGEKA GIKIKGGGSV DTPSGIMRSM IPRVRTFVRF 240 RPHLVNSDDG EGETIDIPWN RTYQGNTCGN RQAHGRRSEG YKVKRIDVAK RRTVPIQYSN 300 SVCGVVLEDG SSCLEEPVQG RKRCNLHKGR RIKGKPYCSS SSYPCQVEVS NAESVPQLSE 360 NLNNSDQAQE SELMSKNLAT ALKEESRQSS CFEAKEVKTG EAPTEHGTHE TAGFAGIYGQ 420 KSSHAESQSQ EEQPSGRMWF ELLKAQTKSV STHPLRGPRC QTRVADGGAT KNDGTFGMVP 480 NAGRKRCEKL SEKLNCTPKN SLVPMDANLA SRRF

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MPAATAAVRL KREDCPRTKH DSLFSPWKVL VGPSDWEDHA AGKEGVQRYR TRNLPDNFPG  60
LYELGVAAAS DEGLRARRRD SRSVVVVYLG QADSVRARLQ QYGRSGSHLD TGNSAGKNEV  120
NALATGTGLF REVFARGYSV VFRCALMDNK QEAEKTEAQL LRVFDYAWNK LQNGACRREE  180
VLLKLEQISH RSSLLSRVRH MKQTIFGEKA GIKIKGGGSV DTPSGIMRSM IPRVRTFVRF  240
RPHLVNSDDG EGETIDIPWN RTYQGNTCGN RQAHGRRSEG YKVKRIDVAK RRTVPIQYSN  300
SVCGVVLEDG SSCLEEPVQG RKRCNLHKGR RIKGKPYCSS SSYPCQVEVS NAESVPQLSE  360
NLNNSDQAQE SELMSKNLAT ALKEESRQSS CFEAKEVKTG EAPTEHGTHE TAGFAGIYGQ  420
KSSHAESQSQ EEQPSGRMWF ELLKAQTKSV STHPLRGPRC QTRVADGGAT KNDGTFGMVP  480
NAGRKRCEKL SEKLNCTPKN SLVPMDANLA SRRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	489	GRKRCEKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462923965

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2T7EY06	0.0	A0A2T7EY06_9POAL; Uncharacterized protein
STRING	Si029353m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-57	effector of transcription2