PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462923656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 27561.4 Da PI: 8.2603 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+q+G g +W + +++ g++R++k+c++rw++yl 462923656 14 RGPWSPEEDERLRSYVQQHGIGgNWISLPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 31.8 | 3.2e-10 | 71 | 118 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 T++Ed ++ + G++ W+ Ia++++ gRt++++k++w++ 462923656 71 YTEQEDHIICSLYSSIGSRcvalpvAWSIIASKLP-GRTDNDVKNYWNT 118 69*********************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.176 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-25 | 11 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.35E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 10.942 | 67 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-6 | 67 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-9 | 69 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 70 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-6 | 71 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDERLRSYVQ QHGIGGNWIS LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDHIIC SLYSSIGSRC VALPVAWSII ASKLPGRTDN DVKNYWNTKL 120 KKKAMAAATS PALSPASSSV TSSPSCDGRF ATAFPQPQGL IRFDAPAAPP CRSRTELAPV 180 PPAAVALDGG DVFLHELVGG DQPLFSYGDF FAGLQPQDRA LQELSACYFP NMAEMWGAAD 240 HAHAKPQGLC NTLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-23 | 14 | 124 | 7 | 108 | B-MYB |
1h8a_C | 8e-23 | 11 | 124 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462923656 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679430 | 1e-108 | HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654754.1 | 1e-113 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A3L6T1M0 | 1e-113 | A0A3L6T1M0_PANMI; Transcription factor RAX2-like | ||||
STRING | OB05G32650.1 | 1e-113 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 7e-64 | myb domain protein 84 |