PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462923503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17490.7 Da PI: 9.6107 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9e-21 | 85 | 136 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ 462923503 85 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 136 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-33 | 84 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-14 | 85 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.223 | 85 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-38 | 85 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 85 | 144 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.22E-29 | 85 | 144 | No hit | No description |
PRINTS | PR00367 | 5.7E-14 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-14 | 125 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDFSGEVDDF WLQLIREQLH GAEACQLPVP DAASASATRS TPVSDPARRP ALTISLPPTS 60 HAWGPGAAPL PATAAACLDV DDFRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTAV 120 EAARAYDRAA FRMRGAKAIL NFPNEVGSRG PAEASPRCRG GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 84 | 148 | 4 | 68 | ATERF1 |
3gcc_A | 1e-28 | 84 | 148 | 4 | 68 | ATERF1 |
5wx9_A | 4e-28 | 85 | 145 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462923503 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084056 | 4e-96 | BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170666.1 | 6e-69 | uncharacterized protein LOC100384725 | ||||
Swissprot | O80341 | 2e-35 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A3L6EI07 | 2e-68 | A0A3L6EI07_MAIZE; Ethylene-responsive transcription factor 5 | ||||
STRING | GRMZM2G057386_P01 | 2e-68 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-25 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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