PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462922692

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 93aa MW: 10503.2 Da PI: 8.844

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462922692	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++++++G+g +W + ++++g++R++k+c++rw++yl 462922692 14 KGPWSPEEDAMLKNYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-23	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.101	9	66	IPR017930	Myb domain
SMART	SM00717	4.0E-13	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.46E-20	15	89	IPR009057	Homeodomain-like
CDD	cd00167	1.79E-10	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-6	66	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MGRAPCCDKA TVKKGPWSPE EDAMLKNYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTPEEDSIIC SLYISIGSRC RPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.
UniProt	Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269\|PubMed:24563287}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462922692

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111788	6e-94	AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445306.1	2e-61	transcription factor MYB36
Refseq	XP_004973097.1	2e-61	transcription factor MYB36
Swissprot	F4JSU0	2e-54	MYB87_ARATH; Transcription factor MYB87
Swissprot	Q9M2Y9	3e-54	RAX3_ARATH; Transcription factor RAX3
TrEMBL	C5YJL7	5e-60	C5YJL7_SORBI; Uncharacterized protein
TrEMBL	K3YMV2	4e-60	K3YMV2_SETIT; Uncharacterized protein
STRING	Si015585m	7e-61	(Setaria italica)
STRING	Sb07g008580.1	8e-61	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	1e-56	myb domain protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Fujiwara S, et al. Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis. Biotechnol. Lett., 2014. 36(5): p. 1049-57 [PMID:24563287] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]