PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922416
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 681aa    MW: 73303.4 Da    PI: 6.309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922416genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.94.1e-2465155189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                +fY+eYA+++GF  r+ +s++sk ++e+ ++++fvCs+eg  +++k +  + +++r+r++ r gC+a+++v ++ +++w v+kle+ HnH+l
  462922416  65 EFYDEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKKLAsdEATRKRERMSMREGCNAMMEVVRD-SDHWAVSKLEKAHNHDL 155
                6*********************8777652789********999988775567788899*************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2165155IPR004330FAR1 DNA binding domain
PROSITE profilePS5096124.753356447IPR006630RNA-binding protein Lupus La
Gene3DG3DSA:1.10.10.107.3E-27360443IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM007151.1E-32360440IPR006630RNA-binding protein Lupus La
SuperFamilySSF467852.18E-24360447IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF053832.2E-18366423IPR006630RNA-binding protein Lupus La
PRINTSPR003027.1E-8369386IPR002344Lupus La protein
PRINTSPR003027.1E-8395410IPR002344Lupus La protein
PRINTSPR003027.1E-8426439IPR002344Lupus La protein
SuperFamilySSF549281.61E-9436529IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-8454529IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.917454562IPR000504RNA recognition motif domain
PRINTSPR003027.1E-8510528IPR002344Lupus La protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0005634Cellular Componentnucleus
GO:0030529Cellular Componentintracellular ribonucleoprotein complex
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MSLDTNARSG QNDSLVLGDS VVEEAPNFSA EAAAGPDVMK DFAPAEDPNE PALGMTFESD  60
EAAKEFYDEY ARRLGFPFRV GRSRRSKGTE EVLVMKRFVC SREGMYKKKK LASDEATRKR  120
ERMSMREGCN AMMEVVRDSD HWAVSKLEKA HNHDLGACSK VGYLRARGAQ AQRAGEVGGA  180
AQDGAAGGGV HDDGEVARDE RDIGRQGHPA SPGAVADAEA ELGEPVEDAA GEAVGEEPPL  240
AVELGALPCT PAAAAAAARE LPVPXXXXXX SGPRAPPQPP PVAVVPPPPV IRVFAAPPPP  300
PRAAFFAAPP PPPQFEYYAP VGGRGGFAAK EPKPVPQPEP EVEQPPPAAG GEPLVEGLAD  360
EVVHKITKQV EYYFSDINLA TTEHLMRFIT KDSEGYVPIS VIAGFKKVKT LVHNNSMLAA  420
VLRTSSKLIV SEDGKRVKRQ EPFTESDLQA LQSRIIVAEN LPGDPSYQNL KKIFSSVGSV  480
ISIRTCYPQT PNGTGPATNR SAKLDMLFAN KLHAFVEYET PEDAEKATKG AGKGKKGVPE  540
TDENGEDVST SNQSTEKQFE ESSQLLDVLP EHLFDDNFTE KEVPRRGKGR GRGGRGRGRG  600
YQQYNNNQYH QNHQHYNHHS GNNHGSNRGG GHNHHVGTPP NNQPIKPQPP GPRMPDGTRG  660
FAMGRGKPEV MLPGLCAVGE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4wkr_A8e-1636152833183La-related protein 7
4wkr_B8e-1636152833183La-related protein 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1591599RGGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960758.10.0la-related protein 6B
TrEMBLK3Z5P01e-180K3Z5P0_SETIT; Uncharacterized protein
STRINGPavir.Cb01883.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-20FAR1 family protein