PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462922401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 484aa MW: 53230 Da PI: 8.0381 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 316 | 362 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 Vr +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 462922401 316 SVR-HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 362 688.5569******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.8E-18 | 129 | 251 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-10 | 129 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.21 | 129 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-10 | 209 | 246 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-8 | 212 | 247 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.924 | 313 | 370 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 314 | 325 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-16 | 315 | 371 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-26 | 317 | 376 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-6 | 317 | 362 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-15 | 317 | 372 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.69E-20 | 317 | 372 | No hit | No description |
PRINTS | PR00367 | 2.3E-5 | 352 | 372 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MDMDMSSTYP HHWLSFSLSN NYQHGLLEAF SNSSSAPQLG EEGAVEETPK MEDFLGGVGG 60 TGAPPPGPAE DQLGCGGELG SIAAGFLRQY PATGTPENPG AVTIAMGTDV AESDQARRPA 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGMCLHVTD LSKKPAKAFY 180 LGISTATLTQ FGFTFGYQIF FSGTFENKLN WGKHVGGYDK EDKAARAYDL AALKYWGPTT 240 TTNFPVSNYE KELEEMKSMT RQEFIASLRR KSSGFSRGAS IYRGVTSLNN DSVQGSVQHI 300 EPFGQIFVNN AIFFMSVRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 360 RGLNAVTNFD MSRYDVDSIL SSDLPVGGGA ASRASKFPSD SLSPADAGAM LTGLASQAMP 420 PSEKDYWSLL ALHYQQQQQQ QQQQFSASAF DAYGSGVNVA QPQRQQQQRR RHVGCHHRSN 480 GTAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462922401 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965682.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-114 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1E5V5G5 | 0.0 | A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Si008325m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-109 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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