PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462921848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 165aa MW: 17730.9 Da PI: 9.2675 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.5 | 1.7e-25 | 2 | 88 | 5 | 83 |
-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 tpsdv++++rlv+pk +ae+h + + + ++ l +ed +g ++W+++++y+++s++yvlt+GW++Fv+ +gL +gD+v+F+ 462921848 2 VTPSDVGRLNRLVVPKVHAEKHfpplgdDDDAAAPVLLAFEDGDGggKVWRFRYSYWGSSQSYVLTRGWSRFVRGKGLAAGDTVTFS 88 589************************9888899********88888***************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.59 | 1 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-12 | 1 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-31 | 2 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-22 | 2 | 89 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.07E-22 | 2 | 87 | No hit | No description |
SuperFamily | SSF101936 | 1.29E-24 | 2 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
AVTPSDVGRL NRLVVPKVHA EKHFPPLGDD DDAAAPVLLA FEDGDGGGKV WRFRYSYWGS 60 SQSYVLTRGW SRFVRGKGLA AGDTVTFSQA ATATTASAAG EISDKRRMFI ECRKRKRTTK 120 DGGGGMVVDD CPQHGGERVV RLFGANIAAA IGVHTSFDRQ LDACS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-36 | 1 | 90 | 17 | 103 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 104 | 116 | KRRMFIECRKRKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462921848 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806570.1 | 3e-64 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q0DXB1 | 2e-42 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
TrEMBL | A0A2T7E8E6 | 2e-66 | A0A2T7E8E6_9POAL; Uncharacterized protein | ||||
STRING | Sb09g004140.1 | 6e-46 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 4e-33 | related to ABI3/VP1 2 |