PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462921630

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 1439aa MW: 161043 Da PI: 6.0315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462921630	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	294	341	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ ++ L++l+P+ +++Ka+iL +++ Y+k+L+ 462921630 294 KNHVMSERRRREKLNEMYAVLKSLVPTT-----HRMDKASILAETITYLKELE 341 5799*********************7.....59*************996 PP
2	HLH	39.5	9.9e-13	1256	1306	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ + ++Ka+iL +++ Y+k+L+ 462921630 1256 KNHVMSERRRREKLNEMFLVLKSLVPTiH---KVISMDKASILAETIAYLKELE 1306 5799*********************66...6666*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.1E-48	19	189	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.139	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-17	294	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-14	294	345	No hit	No description
Pfam	PF00010	2.8E-10	295	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-17	295	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-16	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF14215	5.6E-52	465	648	IPR025610	Transcription factor MYC/MYB N-terminal
SMART	SM00353	16	751	792	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-4	770	797	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF14215	4.5E-45	915	1094	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.79	1253	1305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-16	1255	1319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-14	1256	1310	No hit	No description
Pfam	PF00010	3.5E-10	1257	1306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	1257	1318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-15	1259	1311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1439 aa Download sequence Send to blast
MAPSAPPVVQ EEPPPGKQLR NQLAAAVRSI NWTYAIFWSI SNSHPRVLTW KDGFYHGEVK 60 TRRIANSMEL TVDQLVLQRS EQLRELYESL LSGTCDHRAE RPSISLSPED LGDMEWYYVV 120 CMTYAFRPGQ GLPGRSFARN EHVWLCNAHM ADSKTFPRKL LAKTASIQTI VCIPLMGGVL 180 ELGTTASITA VVDDFYGLWE ELLDVHTLHD TNLIMDGSSL VAASEAKDAA TSSIPEDSSR 240 VTHFINWTRS ESDELVVPVI EEPQKLLKKV VAAGAWMNNS VESTARTTHE RGIKNHVMSE 300 RRRREKLNEM YAVLKSLVPT THRMDKASIL AETITYLKEL EQKVKELESR RESISSPDDK 360 RPTSHENEII GKRVPATTKR KKLASKPGNG MEMEHHWVFS KDGPINVNVT VIGTESPLGL 420 FKGWPKQSQC HRHWHGGAPR GKITAMALPA ASSRLQEEPQ QGKQLTNQLA AAVRSINWSY 480 ALFWSVSSTH PGVLTWTDGF YNGEIKTRKI SNSAELTADE LVMQRSEQLR ELYRSLLSGE 540 CDHRAARPVA ALSPDELGET EWYYVVCMTY AFRPGQGLPG KSFASNEHVW LCNAHLADSK 600 TFPRVLLAKS ASIQTIVCIP LMSGVLELGT TDSVTEDPDL VSRVTTSFWD RQFRTISVDP 660 SSSCPSANVT SEDDDRIVFE DLDHNAMETM IAGANELGHV EILSNASLEH ATKGIDEFYS 720 LCEELDVQPL EDDWIMDGSF EIPCSPAAAV PGAATNDAGN RLHSELLLEV DKASILAETI 780 AYLKELERRV EELESTSREP ITQPSGTERL RGRGHVNGII GKRVCGAKRK AMDTEHQLHH 840 WVPSKDGSSN VTVTVTDRDV LLEVQCRWEE LLIARVFDAM KTLHLDVLSV QASTPDGFMG 900 LKIRAQEEQH PDMHLRSQLA AAVRSINWSY AIFWSISSSH PRALTWKDGF YNGEIKTRKI 960 ANSMELTAEQ LILQRSEQLL ELYESLLSGR CDHRTGRPVA ALSPEDLGST EWYYVVCMTY 1020 AFRPGQGLPG RCFASNEHVW LCNAHLADSK KDFPRALLAK TIVCIPLKGG VLELGTTALV 1080 PEDPDLLTRA ITYFKELKLP RGAENPSTNH VEATNVIVLD DMDEDAMETT IDEGHEIGEV 1140 DCLFSGNLEQ ITKEIDDFYG LLEEVDVQPL QDSDWIMDSL LAGPEANKDD ATLNTRGDSS 1200 RATSFTPWTR FKSDELAVRV IREPQKFLKR VVAGGAWTNN NGGESTARTP QESGIKNHVM 1260 SERRRREKLN EMFLVLKSLV PTIHKVISMD KASILAETIA YLKELERRVK ELEFRREATS 1320 RPGETRHGNF PARAKRKKVS ELSSGDMEMK HHWVLSKDRP NNVNVTVMGT EVLLEMQCRW 1380 KELLMTRVFD KIKSLSLDVL SVEASTKDCL MGLKIRAQFS SSAAISPAMI REALLFGEL

Sequence ? help Back to Top

Protein Sequence Length: 1439 aa Download sequence Send to blast

MAPSAPPVVQ EEPPPGKQLR NQLAAAVRSI NWTYAIFWSI SNSHPRVLTW KDGFYHGEVK  60
TRRIANSMEL TVDQLVLQRS EQLRELYESL LSGTCDHRAE RPSISLSPED LGDMEWYYVV  120
CMTYAFRPGQ GLPGRSFARN EHVWLCNAHM ADSKTFPRKL LAKTASIQTI VCIPLMGGVL  180
ELGTTASITA VVDDFYGLWE ELLDVHTLHD TNLIMDGSSL VAASEAKDAA TSSIPEDSSR  240
VTHFINWTRS ESDELVVPVI EEPQKLLKKV VAAGAWMNNS VESTARTTHE RGIKNHVMSE  300
RRRREKLNEM YAVLKSLVPT THRMDKASIL AETITYLKEL EQKVKELESR RESISSPDDK  360
RPTSHENEII GKRVPATTKR KKLASKPGNG MEMEHHWVFS KDGPINVNVT VIGTESPLGL  420
FKGWPKQSQC HRHWHGGAPR GKITAMALPA ASSRLQEEPQ QGKQLTNQLA AAVRSINWSY  480
ALFWSVSSTH PGVLTWTDGF YNGEIKTRKI SNSAELTADE LVMQRSEQLR ELYRSLLSGE  540
CDHRAARPVA ALSPDELGET EWYYVVCMTY AFRPGQGLPG KSFASNEHVW LCNAHLADSK  600
TFPRVLLAKS ASIQTIVCIP LMSGVLELGT TDSVTEDPDL VSRVTTSFWD RQFRTISVDP  660
SSSCPSANVT SEDDDRIVFE DLDHNAMETM IAGANELGHV EILSNASLEH ATKGIDEFYS  720
LCEELDVQPL EDDWIMDGSF EIPCSPAAAV PGAATNDAGN RLHSELLLEV DKASILAETI  780
AYLKELERRV EELESTSREP ITQPSGTERL RGRGHVNGII GKRVCGAKRK AMDTEHQLHH  840
WVPSKDGSSN VTVTVTDRDV LLEVQCRWEE LLIARVFDAM KTLHLDVLSV QASTPDGFMG  900
LKIRAQEEQH PDMHLRSQLA AAVRSINWSY AIFWSISSSH PRALTWKDGF YNGEIKTRKI  960
ANSMELTAEQ LILQRSEQLL ELYESLLSGR CDHRTGRPVA ALSPEDLGST EWYYVVCMTY  1020
AFRPGQGLPG RCFASNEHVW LCNAHLADSK KDFPRALLAK TIVCIPLKGG VLELGTTALV  1080
PEDPDLLTRA ITYFKELKLP RGAENPSTNH VEATNVIVLD DMDEDAMETT IDEGHEIGEV  1140
DCLFSGNLEQ ITKEIDDFYG LLEEVDVQPL QDSDWIMDSL LAGPEANKDD ATLNTRGDSS  1200
RATSFTPWTR FKSDELAVRV IREPQKFLKR VVAGGAWTNN NGGESTARTP QESGIKNHVM  1260
SERRRREKLN EMFLVLKSLV PTIHKVISMD KASILAETIA YLKELERRVK ELEFRREATS  1320
RPGETRHGNF PARAKRKKVS ELSSGDMEMK HHWVLSKDRP NNVNVTVMGT EVLLEMQCRW  1380
KELLMTRVFD KIKSLSLDVL SVEASTKDCL MGLKIRAQFS SSAAISPAMI REALLFGEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	7e-20	19	1094	1	192	Transcription factor MYC3
4rqw_B	7e-20	19	1094	1	192	Transcription factor MYC3
4rs9_A	7e-20	19	1094	1	192	Transcription factor MYC3
4yz6_A	7e-20	19	1094	1	192	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1261	1266	ERRRRE
2	1262	1267	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462921630

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	1e-170	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	K3XG26	0.0	K3XG26_SETIT; Uncharacterized protein
STRING	Si000845m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-61	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]