PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920863
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 297aa    MW: 32098.4 Da    PI: 9.6364
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920863genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31167225259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver+++dp ++++tYe++Hnh 
  462920863 167 ADNYSWRKYGQKPIKGSPHPRGYYRCSSMkDCPARKHVERCRSDPAMLIVTYENDHNHA 225
                69************************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-13132164IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.1E-34154227IPR003657WRKY domain
PROSITE profilePS5081131.204161227IPR003657WRKY domain
SuperFamilySSF1182902.75E-27162227IPR003657WRKY domain
SMARTSM007742.7E-37166226IPR003657WRKY domain
PfamPF031062.3E-26168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MFLETPLLDL NSCNVLSPNA VALQKNSAKV VAAVSAANPC ATTQQQQAKA QKSFLFDQAP  60
SAEQFHIEVP VPASRGGGGA KEVISFSFDN NSVCTSSAAT SFFNSINSHL ISMSDAATSS  120
AATGKKACGK RGEDGGVKCH CPKKKKPRDK RVVRVPAISD KNADIPADNY SWRKYGQKPI  180
KGSPHPRGYY RCSSMKDCPA RKHVERCRSD PAMLIVTYEN DHNHALPPTP KPASDSAGRQ  240
PGPTSSCRPW TIHLACTATK IILRALLQLH LVKHALQEQE HSVASSLVQS DRNEEVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-211642281275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432521e-100AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665604.11e-107protein WRKY1-like
TrEMBLK4AMM71e-104K4AMM7_SETIT; Uncharacterized protein
STRINGGRMZM2G164082_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-40WRKY DNA-binding protein 21