PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920857
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 425aa    MW: 47532.3 Da    PI: 5.6166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920857genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17133179148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
        462920857 133 KGQWTTEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 179
                      799*****************************.*************97 PP
2Myb_DNA-binding54.42.8e-17187227345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eEd+ l++a+k+ G++ W+ Ia++++ gRt++++k++w+
        462920857 187 IWSDEEDKVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 227
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.389128183IPR017930Myb domain
SuperFamilySSF466897.55E-31130226IPR009057Homeodomain-like
SMARTSM007175.4E-14132181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-28134186IPR009057Homeodomain-like
CDDcd001671.75E-14136179No hitNo description
PfamPF139216.4E-16136189No hitNo description
PROSITE profilePS5129420.19184234IPR017930Myb domain
SMARTSM007171.8E-16184232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21187232IPR009057Homeodomain-like
CDDcd001677.57E-14188230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGNGVDTDIN MSTDCSRAGV KKFHQNGFCE LHRVDHQFEG IGEYTASGPM VPSATFNDLG  60
HQYYSGRESE GPGIDHASSV DQRVGFYLPL LTPKSEISLQ MGSGLGSYSA CEMNNRFVPR  120
KKALSLKKTN VVKGQWTTEE DRKLVKLVEQ FGLRKWSCIA QILPGRVGKQ CRERWHNHLR  180
PNIKKDIWSD EEDKVLIQAH KEVGNKWAEI AKRLPGRTEN SIKNHWNATK RRQFARRRSR  240
ASSKAPKSST LLQNYIRSLG FGPSKTAAPL AQPTPLPSSP AKPAVFNDEI AEHNQSDMLG  300
VQGLLGIYEN SCVETQSCEE LLAPICDDFS ADMCDGLFDT EEEAAIQVYS ADDEVDVNYV  360
FNHLDYAMIK VDDEIDMDMT WVDDDALGCV EPGSAQSHGT RHVKEEMDLV EMVAATQNCT  420
RQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-461312332104C-Myb DNA-Binding Domain
1msf_C1e-461312332104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A1E5V2V30.0A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-60myb domain protein 98