PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462920583

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 332aa MW: 36827.4 Da PI: 9.3383

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462920583	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	48	88	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L 462920583 48 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 88 788*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-8	39	91	No hit	No description
SMART	SM00338	3.0E-9	44	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	46	90	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.0E-7	48	91	No hit	No description
Pfam	PF00170	5.6E-7	48	88	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	51	66	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-33	130	205	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MMADASPRTP DTSTDDTDEN HRLESGQGAL AAASDSSDRS KDKPGDQKTL RRLAQNREAA 60 RKSRLRKKAY VQQLENSRLK LTQLEQELQR ARQQGIFISS SVDQTHSKTG NGALAFDMEY 120 ARWLEEHNRQ ISELRAGVSA HAGDADLRSV VDKIMSHYDE IFKLKGNAAK ADVFHVLSGM 180 WKTPAERCFL WLGGFRPSEV LKLLSTQLEP LTEQQLSGIG NLQQSSQQAE DALSQGMEAL 240 QQSLAETLAG SLSSSGSTGN VANYMGQMAM AMGKLGTLEN FLRQADNLRL QTLQQLQRIL 300 TTRQSARAFL VISDYSSRLR ALSSLWLARP KE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462920583

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036137	0.0	BT036137.1 Zea mays full-length cDNA clone ZM_BFb0097M11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457410.1	0.0	transcription factor TGA2.3 isoform X1
Refseq	XP_021312815.1	0.0	transcription factor TGA2.3 isoform X1
Refseq	XP_021312816.1	0.0	transcription factor TGA2.3 isoform X1
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	C5XQR1	0.0	C5XQR1_SORBI; Uncharacterized protein
STRING	Pavir.Ea01074.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-125	TGACG motif-binding factor 6

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]