PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462920544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 412aa MW: 44768.3 Da PI: 5.3292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 16 | 47 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd +l+ +++++G +W++ ++ g 462920544 16 KGSWTPEEDMRLIAYIQKYGHANWRALPKQAG 47 799***********************999988 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl 462920544 66 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 113 79********************************************97 PP | |||||||
3 | Myb_DNA-binding | 55.8 | 1.1e-17 | 119 | 164 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l 462920544 119 RGNFTAEEEETIIKLHAMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 164 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 7 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.38E-8 | 10 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.422 | 11 | 50 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.12 | 15 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-7 | 16 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-5 | 18 | 48 | No hit | No description |
PROSITE profile | PS51294 | 16.976 | 61 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-29 | 65 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 65 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 66 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 67 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.91E-11 | 68 | 113 | No hit | No description |
PROSITE profile | PS51294 | 25.392 | 114 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 118 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 119 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-27 | 121 | 167 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.84E-12 | 121 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGTYR FAAVREELPA 60 AAHTNKGAWT KEEDQRLVAY IKAHGEGCWR SLPKAAGLQR CGKSCRLRWI NYLRPDLKRG 120 NFTAEEEETI IKLHAMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAP RGDDGAAGAR 180 KKKKQKSSSA GAEQEAAVIP SPSLCWFATT TNCSSGDSSG EQQSNATDEL DPRSLDIPTM 240 LDDAGFDFGD MLVDPTAPVP ELYCPSVSVP TSPCVSSTSP PPARGGVDDL LELPEIEIYQ 300 ELWSIIDGDG GSFAEAPPAA PCHGNATGAD AATTSQEEGK EWWLENLERE LGLWGPMEDY 360 QNPMGPLGPI AHPDSLPAMV QDPVSCYFQP GPNPTTFQGQ PEHSAVLTSN RI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-28 | 14 | 168 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-28 | 14 | 168 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 183 | KKRVAPRGDDGAAGARKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462920544 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111960 | 2e-81 | AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824709.1 | 1e-146 | myb-related protein Zm1-like | ||||
TrEMBL | A0A2S3I9V4 | 1e-145 | A0A2S3I9V4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00752.1.p | 1e-141 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-65 | myb domain protein 4 |