PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920444
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 310aa    MW: 33664.8 Da    PI: 7.813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920444genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
        462920444 14 KGPWAPEEDRKLKEYIHKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.72.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
        462920444  69 GDFSEDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.372962IPR017930Myb domain
SuperFamilySSF466891.21E-2611109IPR009057Homeodomain-like
SMARTSM007174.3E-121364IPR001005SANT/Myb domain
PfamPF002497.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001671.47E-91662No hitNo description
PROSITE profilePS5129422.08363117IPR017930Myb domain
SMARTSM007176.9E-1267115IPR001005SANT/Myb domain
PfamPF002492.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2370118IPR009057Homeodomain-like
CDDcd001671.06E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKS SVKKGPWAPE EDRKLKEYIH KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMQA  120
HGLQLPTTGS HHRSKKQQQQ HLFISSEAIS PAPPTGDDLL SSLQHLSATP AHNFSHHYGS  180
HCYDNTSTSS LLMFGGNGDQ QMMMSSSSSD SGAGAGLGLY FELCNHVHDS AIAAGLSMES  240
FIVQDDHHLK APLLIPSDVD GANTCCYEEA KPLVDLTAGG GGSNGAGDSF FYSSSSPTAA  300
GVSRQGSFMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.11e-101myb-related protein Hv1
TrEMBLA0A2S3GXU51e-104A0A2S3GXU5_9POAL; Uncharacterized protein
STRINGSi030544m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-76myb domain protein 36