PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462920346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25096.9 Da PI: 6.0857 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.7e-16 | 5 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEd +l ++++G +W++ ++ g+ R++k+c++rw +y 462920346 5 RGPWTPEEDRILTAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINY 51 89******************************99**********998 PP | |||||||
2 | Myb_DNA-binding | 23.6 | 1.2e-07 | 75 | 98 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k+ w+++ 462920346 75 RWSAIAARLP-GRTDNEIKNVWHTH 98 6*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.893 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-22 | 1 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 3 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 5 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 7 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-11 | 75 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-6 | 75 | 98 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.017 | 75 | 99 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGLKRGPWTP EEDRILTAHI ERHGHSNWRA LPKQAGLLRC GKSCRLRWIN YSHHPAPPNA 60 RQQNMRTKLL FCHFRWSAIA ARLPGRTDNE IKNVWHTHAP KRKAKKQQQP QPDVVVLDGP 120 TTVSVSSPEQ SLSTTTSATT TTTDYSAASS MENADSFTSE EFQIDDSFWT ETLVMTASED 180 SSDSGMEIGD DFGASAAPET SSDDMDFWLR LFMQAGDMQN LAEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-11 | 3 | 97 | 25 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462920346 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670163 | 4e-57 | KJ670163.1 Saccharum arundinaceum Myb4 transcription factor (Myb4) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106008.1 | 7e-91 | transcription factor MYB39 | ||||
Swissprot | Q6K1S6 | 9e-75 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A3L6F1W8 | 6e-92 | A0A3L6F1W8_MAIZE; Myb-related protein Myb4 | ||||
TrEMBL | B6U8A6 | 6e-92 | B6U8A6_MAIZE; Myb-related protein Myb4 | ||||
STRING | GRMZM2G127857_P01 | 3e-89 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-44 | myb domain protein 15 |
Publications ? help Back to Top | |||
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