PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920247
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 329aa    MW: 36394.3 Da    PI: 7.2414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920247genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51341611128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+evl++ +g+l
  462920247  34 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDLNRIEPWELPDAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVLNAaTGAL 132
                79************************9777.34***************8888899**************************************9878899 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfykgrap+gekt+Wv+heyrl
  462920247 133 LGLKKTLVFYKGRAPRGEKTKWVLHEYRL 161
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6129184IPR003441NAC domain
PROSITE profilePS5100558.48634184IPR003441NAC domain
PfamPF023651.0E-2635161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQQQHQHHAM VGDALWDILG EEMAAAGAGG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA  60
CCGVDIAEVD LNRIEPWELP DAARMGEREW YFFSLRDRKY PTGLRTNRAT GAGYWKATGK  120
DREVLNAATG ALLGLKKTLV FYKGRAPRGE KTKWVLHEYR LDGEFAAGRR ACKEEWVICR  180
IFHKAADQYA KMMMLKSPYY HPMDPSSFCF QQDPHAALPL TYPTSNLSHA LSFHHGHPAM  240
PPSSMENNET SKRNNGVLQL EPNGSGNMSL LPFLPFTSTV AGKSAPPPHQ PAGVNAGPQE  300
PPPPPTWLDA YQHSGFLYEM GPPAAPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-493418617167NO APICAL MERISTEM PROTEIN
1ut4_B2e-493418617167NO APICAL MERISTEM PROTEIN
1ut7_A2e-493418617167NO APICAL MERISTEM PROTEIN
1ut7_B2e-493418617167NO APICAL MERISTEM PROTEIN
4dul_A2e-493418617167NAC domain-containing protein 19
4dul_B2e-493418617167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920247
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612701e-170BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444766.11e-161protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8512e-85NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1E5UVW31e-161A0A1E5UVW3_9POAL; Protein CUP-SHAPED COTYLEDON 3
STRINGSb07g027650.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-86NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]