PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462920088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 348aa MW: 39354.4 Da PI: 11.2075 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 63 | 157 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grs 88 f k lt+sdv+k++rl +p++ ae++ gg+ ++ l++ed++g W ++++++++s++yvltkGW +Fvk+++L +gD++ F+ g++ 462920088 63 FSKRLTKSDVGKLNRLLIPRQEAERFfpmalrsmGGDAAS--FLIFEDSTGVIWHFRYTFWQSSKTYVLTKGWIRFVKEKKLSDGDTIFFYQRaGED 157 8899*****************************8777655..5999*********************************************431333 PP | |||||||
2 | B3 | 73.6 | 2.4e-23 | 186 | 276 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k lt+sdv+k++rl +p++ ae++ gg+ ++ l++ed++g W ++++++++s++yvltkGW +Fvk+++L +gD++ F+ +r 462920088 186 FSKRLTKSDVGKLNRLLIPRQEAERFfpmalrsmGGDAAS--FLIFEDSTGVIWHFRYTFWQSSKTYVLTKGWIRFVKEKKLSDGDTIFFY--QR 276 8899*****************************8777655..5999********************************************9..33 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-30 | 59 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-21 | 61 | 151 | No hit | No description |
SuperFamily | SSF101936 | 3.4E-25 | 62 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.647 | 63 | 169 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-13 | 63 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-20 | 63 | 158 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-30 | 182 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.99E-22 | 184 | 281 | No hit | No description |
SuperFamily | SSF101936 | 2.22E-25 | 185 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 186 | 289 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-13 | 186 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-19 | 186 | 276 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MQGEQTPMMH QSLLAMVNPV SSPIYGAPSA PMSAPVFPSS SRFGAGASAL LGGRQGVDMD 60 FMFSKRLTKS DVGKLNRLLI PRQEAERFFP MALRSMGGDA ASFLIFEDST GVIWHFRYTF 120 WQSSKTYVLT KGWIRFVKEK KLSDGDTIFF YQRAGEDSKT MHSSRFGAGA SALLGGRQGV 180 DMDFMFSKRL TKSDVGKLNR LLIPRQEAER FFPMALRSMG GDAASFLIFE DSTGVIWHFR 240 YTFWQSSKTY VLTKGWIRFV KEKKLSDGDT IFFYQRADGG CTGRIQGASR RRRRFNVLYC 300 RRKTCSSPVW WLTWRIQRPA GAAARVRRLG PLPTPTWSTS TPPLPMGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-29 | 58 | 292 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-29 | 58 | 292 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462920088 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q8RZX9 | 7e-31 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16167 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-31 | B3 family protein |