PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919962
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 904aa    MW: 99572.4 Da    PI: 9.3033
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919962genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.52.8e-21812892186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +e++ Li++r em+er+++ k ++ lWee+s  +  +g++r+p qCk+ w +l ++y++ k+ e+++     +t+pyf++++
  462919962 812 KWKPEEIKSLIQMRGEMNERFQSVKGRMVLWEEISGSLLNQGISRTPAQCKSLWTSLVQKYEESKKDEESK-----KTWPYFSSMD 892
                7*******************************************************************984.....78*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.7E-68134384IPR001279Metallo-beta-lactamase
SuperFamilySSF562814.95E-66135530IPR001279Metallo-beta-lactamase
SMARTSM008496.3E-25147344IPR001279Metallo-beta-lactamase
PfamPF127066.4E-11159294IPR001279Metallo-beta-lactamase
PROSITE profilePS500907.747805869IPR017877Myb-like domain
SMARTSM007170.0081809871IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-5809871IPR009057Homeodomain-like
CDDcd122032.02E-22811876No hitNo description
PfamPF138372.0E-17811894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
NPKLEKDPAE GRSRRLRYLL RFPPSLLFTL HLSPPPPSHL LSTAAAMVAL ASVSSLCPCG  60
LGRRLSATAP ASTSASVSAT ISCCAVATPS SGKGPHVSRT PRGRLRRTEG ATKSLEDSVK  120
RKMEQFYEGV DGPPLRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGVMFPD YDEFGVQKII  180
PDTTFIKKWS HKIEAVIITH GHEDHIGALP WVIPALDSTT PIYASSFTME LIKKRLKEFG  240
IFLSSRLKTF RVKKRFQAGP FEVEPIRVTH SIPDCCGLVL RCDDGIIFHT GDWKIDESPV  300
DGKIFDRQAL EELSKEGVTL MMSDSTNVLS PGRSISESVV AGSLLRHVSE AKGRVITTQF  360
ASNIHRIGSI KAAADLTGRK LVFVGMSLRT YLEAAFKDGK APLDPSTLVK AEDMDAYAPK  420
DLLVVTTGSQ GEPRAALNLA SYGGSHALKL TKEDVLLYSA KVIPGNETRV MKMMNRLTDL  480
GPKIEEVLQI VKPQHFLPVH GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV  540
LSNGFVSLGK QDFQLMYSDG DKAFGTSTDL CVDERLRIAS DGIIFVSMEI FRPHREHASA  600
QSGLKGKFKI TTRCLWLDNG RLLDALYKAA HAALSSCPVN CPLSHMERMV SEILRKMVRK  660
YSGKRPDVIA VATENTTVGF AEHLESKSSG NIGPSSATSH LSRSPAQSLE GSHKTRPDDS  720
DMETEETLPE VERTSPDDAT TSSNGEVFFS SDLHKPKTLE HFWESFKSPT AVKIARIVNG  780
QGNRPKVSKI GIMGKDSTQS ALAPVSSPKK NKWKPEEIKS LIQMRGEMNE RFQSVKGRMV  840
LWEEISGSLL NQGISRTPAQ CKSLWTSLVQ KYEESKKDEE SKKTWPYFSS MDRILSCEGE  900
MAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-7613567419560RIBONUCLEASE J
5a0t_B3e-7613567419560RIBONUCLEASE J
5a0v_A3e-7613567419560RIBONUCLEASE J
5a0v_B3e-7613567419560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919962
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952679.10.0uncharacterized protein LOC101761263 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLK3YPU20.0K3YPU2_SETIT; Uncharacterized protein
STRINGPavir.Ab01874.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]