PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919902

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

CPP

Protein Properties

Length: 460aa MW: 49877.7 Da PI: 6.9513

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919902	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.9	1.1e-14	147	184	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC C+a+g++C+e+C Ce+C+N++ 462919902 147 SKTCSCKKSKCLKLYCVCYASGTHCTESCGCESCHNNK 184 699*********************************86 PP
2	TCR	46.1	9.7e-15	226	261	4	39
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dC+N 462919902 226 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCRNP 261 79********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.4E-9	145	186	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.092	146	263	IPR005172	CRC domain
Pfam	PF03638	4.3E-11	148	183	IPR005172	CRC domain
SMART	SM01114	7.5E-14	223	264	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.5E-11	226	260	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
LLCRPIQSFA SLSQPLFASC PSSPTPHGPD RASSLSRARL RFAVTANPAP PPPPIEAPPA 60 PDPMETEEAP KPPDVEPIGS EPDDAERTAP PPPPPAPTPD LAPAPPAAAE AAAPESVLPA 120 AVSPPPAEVN GSFDRRKKRK ADEGDGSKTC SCKKSKCLKL YCVCYASGTH CTESCGCESC 180 HNNKPIQGAP RIAPAPVLPV KFVPTLEAGQ DTAEQLIRSP MDLVRRKCTC KKSGCLKKYC 240 DCYQGGAGCS INCKCDDCRN PFGKKVGVIL DVKSSLAAPL TLNEGNGAEV DSSDDEDDYY 300 MNRPLSPIPP SPVSRESSFQ QETLVGVEVQ TMNGHLYPKP LTQVRPESSA WQLSSRRPGE 360 ESRVEQWNFS RRPSEDRTSD AMEGHADPKF QRNNKKVESH VDKFSIPRCI EVMNAMTDLS 420 PVEKSLAPDV FLNPSNREIF LSLCVEVRTL WLKRKMKSLV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

LLCRPIQSFA SLSQPLFASC PSSPTPHGPD RASSLSRARL RFAVTANPAP PPPPIEAPPA  60
PDPMETEEAP KPPDVEPIGS EPDDAERTAP PPPPPAPTPD LAPAPPAAAE AAAPESVLPA  120
AVSPPPAEVN GSFDRRKKRK ADEGDGSKTC SCKKSKCLKL YCVCYASGTH CTESCGCESC  180
HNNKPIQGAP RIAPAPVLPV KFVPTLEAGQ DTAEQLIRSP MDLVRRKCTC KKSGCLKKYC  240
DCYQGGAGCS INCKCDDCRN PFGKKVGVIL DVKSSLAAPL TLNEGNGAEV DSSDDEDDYY  300
MNRPLSPIPP SPVSRESSFQ QETLVGVEVQ TMNGHLYPKP LTQVRPESSA WQLSSRRPGE  360
ESRVEQWNFS RRPSEDRTSD AMEGHADPKF QRNNKKVESH VDKFSIPRCI EVMNAMTDLS  420
PVEKSLAPDV FLNPSNREIF LSLCVEVRTL WLKRKMKSLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919902

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809474.1	1e-180	RNA-binding protein MEX3A-like
TrEMBL	I1IGP0	1e-179	I1IGP0_BRADI; Uncharacterized protein
STRING	BRADI4G02410.1	1e-180	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9610	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-22	TESMIN/TSO1-like CXC 2