PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919899

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

CPP

Protein Properties

Length: 596aa MW: 65358.9 Da PI: 6.7676

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919899	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.6	1.6e-15	455	495	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+CkkskClk+YCeCfaag +C+e C+C++C N++++ 462919899 455 SCKKCSCKKSKCLKLYCECFAAGIYCTEPCSCQGCLNNHDN 495 689**********************************9875 PP
2	TCR	28	4.3e-09	540	562	1	23
TCR 1 kekkgCnCkkskClkkYCeCfaa 23 ++k+gCnCkks+C kkYCeCf+ 462919899 540 RHKRGCNCKKSSCTKKYCECFQT 562 589******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.3E-16	454	495	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.873	455	579	IPR005172	CRC domain
Pfam	PF03638	1.7E-11	457	492	IPR005172	CRC domain
SMART	SM01114	0.0049	540	569	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.9E-5	542	562	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
DSPVFNFINN LSPIPPPKPS DSAHNVQLFK SSDLAPVSSI FASPHVPPTK EPKLLMRDDS 60 VQFAQESHSP NSVRTRTGTT SSFRLIRCRN IVSENRNITC NLNEASIDSL DDASNSESKL 120 PQSTQNGVGS EETDKNQHAD GKTDLNISQE CKDLEGIILD QSGPDNIDPS HSGKDVHENQ 180 LSEQNEDEVA TYDGGYMITH EPIGDMLTLA VPFEAETQSA NDTINTDNAY SCKSLPNDNS 240 NGYYIQNSAH EPHHYWAGPV EGVAVDKSTP QMPPDALQLH LMPNDQACKK LNEPSDYMPT 300 KQNVLVLLLW QALSQHLRGM RRRSLFNEKA GATSKGVNKA SDRHFASSST PKCKINSSDN 360 SKALRTPPCA LPGIGLHLNA LAAIPKEKMV PQDTQLVISQ CSNLPCHLGF SPPPYEQSII 420 SDDFAQTTNI VSAEDASQGS PKKKRHKFDN GDGTSCKKCS CKKSKCLKLY CECFAAGIYC 480 TEPCSCQGCL NNHDNMATVL STRQQIESRN PLAFAPKVIH TSETDQELGD YPNKTPASAR 540 HKRGCNCKKS SCTKKYCECF QTLGCSSSRK LQKATIFDKT HWTFFSTGQH SSSSEV

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

DSPVFNFINN LSPIPPPKPS DSAHNVQLFK SSDLAPVSSI FASPHVPPTK EPKLLMRDDS  60
VQFAQESHSP NSVRTRTGTT SSFRLIRCRN IVSENRNITC NLNEASIDSL DDASNSESKL  120
PQSTQNGVGS EETDKNQHAD GKTDLNISQE CKDLEGIILD QSGPDNIDPS HSGKDVHENQ  180
LSEQNEDEVA TYDGGYMITH EPIGDMLTLA VPFEAETQSA NDTINTDNAY SCKSLPNDNS  240
NGYYIQNSAH EPHHYWAGPV EGVAVDKSTP QMPPDALQLH LMPNDQACKK LNEPSDYMPT  300
KQNVLVLLLW QALSQHLRGM RRRSLFNEKA GATSKGVNKA SDRHFASSST PKCKINSSDN  360
SKALRTPPCA LPGIGLHLNA LAAIPKEKMV PQDTQLVISQ CSNLPCHLGF SPPPYEQSII  420
SDDFAQTTNI VSAEDASQGS PKKKRHKFDN GDGTSCKKCS CKKSKCLKLY CECFAAGIYC  480
TEPCSCQGCL NNHDNMATVL STRQQIESRN PLAFAPKVIH TSETDQELGD YPNKTPASAR  540
HKRGCNCKKS SCTKKYCECF QTLGCSSSRK LQKATIFDKT HWTFFSTGQH SSSSEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919899

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963116.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A368QN90	0.0	A0A368QN90_SETIT; Uncharacterized protein
STRING	Si021159m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	6e-51	TESMIN/TSO1-like CXC 2