PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919816
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 383aa    MW: 41229.9 Da    PI: 5.1214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919816genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18155200147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+W++eEd  l ++v++lG ++W++Iar ++ gR++k+c++rw + 
        462919816 155 RGPWSQEEDAVLSRLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 200
                      89******************************.***********985 PP
2Myb_DNA-binding26.31.7e-082112391747
                      HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  17 kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +G++ W+ Ia+ +  gRt++ +k++w++ 
        462919816 211 TVHGNK-WACIAKLLA-GRTDNAIKNHWNST 239
                      67****.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.324150205IPR017930Myb domain
SMARTSM007175.1E-15154203IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-27155241IPR009057Homeodomain-like
PfamPF002497.8E-17155200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-22156211IPR009057Homeodomain-like
CDDcd001672.20E-14157199No hitNo description
PROSITE profilePS512948.341206244IPR017930Myb domain
SMARTSM007171.3206242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-11212241IPR009057Homeodomain-like
PfamPF002496.5E-6213239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSDETAVPPA AVDADAEVTH SLSLSMAGVS QTPTDPHPLP QRQYSSPPAD AAADAEVTLS  60
NSLSMADVSQ TPTQPHPLPH PQYSSPPAAA EVTLSNSLSM ADVSQTLTEP HPLPQPNYSS  120
PPPSGEDDDG AVISGASAEG DAAAAANAPM EERVRGPWSQ EEDAVLSRLV EKLGARNWTL  180
IARGIPGRSG KSCRLRWCNQ LDPQVKRKPF TVHGNKWACI AKLLAGRTDN AIKNHWNSTL  240
RRRYCHGHGQ CSHGGAVELA TPEVSRAVSE ETWPLVDLTS FNSMDVKDAP AQNSTSKLCW  300
VMNYIAEAVD LPYLARPAAR IGAFRPFNLG LAESTKHETA SSVFKFDSTL KALDPENEVF  360
RKPMSDEYLK ERAPTDGPDD PTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-311542436107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417273e-56BT041727.2 Zea mays full-length cDNA clone ZM_BFb0040C04 mRNA, complete cds.
GenBankBT0543183e-56BT054318.1 Zea mays full-length cDNA clone ZM_BFb0295C09 mRNA, complete cds.
GenBankHQ8587633e-56HQ858763.1 Zea mays clone UT1663 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458769.11e-121transcription factor MYB1
RefseqXP_025814267.11e-121transcription factor MYB1-like
TrEMBLA0A0A8ZM401e-122A0A0A8ZM40_ARUDO; Uncharacterized protein
STRINGSb03g039950.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-50myb domain protein 109