PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462919771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 301aa MW: 33972 Da PI: 10.3594 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91 | 5.9e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+lye+ss 462919771 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | SRF-TF | 91 | 5.9e-29 | 68 | 117 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+lye+ss 462919771 68 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYEFSS 117 8***********************************************96 PP | |||||||
3 | K-box | 71.6 | 2.5e-24 | 136 | 229 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne.llleqieelqkkekelqeenkaLrkkl 98 g ++++++ +q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq+Le++Le sl+++R++K + ll+++ieel kk +++en++L +++ 462919771 136 GMNNATSEIMLWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQSLENRLEMSLRNVRTRKVDyLLKSEIEELHKKGSLIHQENMELCRRV 229 45577888899*****************************************************87256789*****************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.268 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-27 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.26E-38 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 7.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.165 | 59 | 119 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.15E-41 | 61 | 135 | No hit | No description |
SMART | SM00432 | 3.3E-35 | 61 | 118 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-32 | 61 | 149 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-26 | 68 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.3E-23 | 143 | 229 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.588 | 144 | 238 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVFSS TGRLYEFSST 60 KGKIVIRRID NSTSRQVTFS KRRNGLLKKA KELSILCDAE VGLIVFSSTG RLYEFSSTNM 120 KTVIDRYAKA KEEQLGMNNA TSEIMLWQRE AASLRQQLHN LQESHKQLMG EELSGLGVRD 180 LQSLENRLEM SLRNVRTRKV DYLLKSEIEE LHKKGSLIHQ ENMELCRRVN IMSQQKLELH 240 KKIQASEQRG IVDANKSPST SYSFGVAKDA DVPANLELSQ SPHKEGGQRE AGAPELGLQL 300 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 132 | 1 | 74 | MEF2C |
5f28_B | 3e-18 | 1 | 132 | 1 | 74 | MEF2C |
5f28_C | 3e-18 | 1 | 132 | 1 | 74 | MEF2C |
5f28_D | 3e-18 | 1 | 132 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462919771 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502904 | 1e-151 | AM502904.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM32A (WM32A gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810861.1 | 1e-144 | MADS-box transcription factor 57-like | ||||
Swissprot | Q6Z6W2 | 1e-133 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A2T8KXQ5 | 1e-145 | A0A2T8KXQ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00445.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-88 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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