PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919744
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 242aa    MW: 26816.1 Da    PI: 10.9127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919744genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-1671118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++lv     +G  +W+++++  g+ R++k+c++rw +yl
        462919744  71 KGPWTAEEDQKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 118
                      79******************************99************97 PP
2Myb_DNA-binding54.13.5e-17127168447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++E+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
        462919744 127 LSEDEEALVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 168
                      589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2162120IPR009057Homeodomain-like
PROSITE profilePS5129415.09366118IPR017930Myb domain
SuperFamilySSF466892.43E-2768165IPR009057Homeodomain-like
SMARTSM007171.2E-1270120IPR001005SANT/Myb domain
PfamPF002491.8E-1471118IPR001005SANT/Myb domain
CDDcd001671.83E-1073118No hitNo description
PROSITE profilePS5129427.693119173IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-25121173IPR009057Homeodomain-like
SMARTSM007172.0E-15123171IPR001005SANT/Myb domain
PfamPF002494.3E-15127168IPR001005SANT/Myb domain
CDDcd001675.76E-13128169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
SKSRLLLLFL CHCSLLKGAA SRDLLHSARF QSTRTSQLAP SSFSLCSVSR RKGARTKMGR  60
QPCCEKVGLK KGPWTAEEDQ KLVTFLLSHG HCCWRLVPKL AGLLRCGKSC RLRWTNYLRP  120
DLKRGLLSED EEALVIDLHA QLGNRWSKIA ARLPGRTDNE IKNHWNTHIK KKLRKMGIDP  180
ATHRPLHPAQ SAEPLATQPL QQDPPAEPAG LLQASNEAPG PSRVHQAAGA NARVVCSSAR  240
RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31691735108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919744
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-158EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149774.12e-91odorant 1 protein
SwissprotQ9C7U74e-83MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1E5VPT04e-94A0A1E5VPT0_9POAL; Protein ODORANT1
STRINGSb04g028850.17e-92(Sorghum bicolor)
STRINGGRMZM2G055158_P018e-91(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-85myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]