PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462919686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 23672.5 Da PI: 4.6482 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.1 | 2.7e-26 | 18 | 108 | 1 | 92 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF+Ptd elvv+yL++++ g +l++ i++v+i+ +eP+dL p e e y +++r+ ky+tg r+nrat +gyWk+tgk+k+v 462919686 18 LPPGFRFEPTDAELVVHYLRRRALGVPLPAGVDISDVRILAHEPSDLlP--PGWAEPERYLYTRREAKYRTGCRANRATGAGYWKNTGKEKPV 108 79****************************555**************43..3346789********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-36 | 11 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.988 | 18 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 19 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MELTSGFSSP AMDARPQLPP GFRFEPTDAE LVVHYLRRRA LGVPLPAGVD ISDVRILAHE 60 PSDLLPPGWA EPERYLYTRR EAKYRTGCRA NRATGAGYWK NTGKEKPVPP TGTKTDWMVH 120 EYRLAGAGLL PWRRSEGWLL CRVFRKTGSA VPVVEVEEEE EAVVEDTEQE EEDEDAAPAA 180 GFIDFFARAE AAQQQQQGRG SLPVVSSSCL TDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-26 | 13 | 148 | 10 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462919686 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575526.1 | 4e-68 | NAC domain-containing protein 83 | ||||
Swissprot | O22798 | 1e-35 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A3L6RAA2 | 2e-73 | A0A3L6RAA2_PANMI; NAC domain-containing protein 83 | ||||
STRING | Pavir.Cb00769.1.p | 7e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-37 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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