PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919188

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 1094aa MW: 121004 Da PI: 7.4466

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919188	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	497	548	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ 462919188 497 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 548 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	487	568	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-26	500	548	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-20	767	862	No hit	No description
SMART	SM00666	5.7E-24	777	859	IPR000270	PB1 domain
Pfam	PF00564	7.1E-15	777	858	IPR000270	PB1 domain
PROSITE profile	PS51745	18.652	777	859	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-24	777	858	No hit	No description
CDD	cd06407	1.10E-32	778	858	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence Send to blast
MGNSDTTSKR VEQINHKWQL HLSLDGDGTD NSSLFKERLT QALRYFKDST DQHLLVQVWA 60 PVKNGDRYVL TTSGQPFVLD HQSIGLLQYR AVSMMYMFSV DGDNAGELGL PGRVYKQKVP 120 EWTPNVQYYS SNEYPRLNHA ISYNVHGTVA LPVFDPSAQS CIAVVELIMT SKKINYACEV 180 DKVCKALEAV NLKSTEIFDH PNVQICNEGR QTALVEILEI LTVVCEEHKL PLAQTWVPCK 240 YRSVLAHGGG LKKSCLSFDG SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQRGQGV 300 PGKAFISHKP CFSKDIRQFC KLEYPLVHYA RMFGLAGCLA ICLQSCYTGH DDYILEFFLP 360 PDCIDEDDQN ALLESILTRM KKCLRSLKVV GDRDLNGVSL QLGNVLKIEN EEFKKDVQFD 420 NSEGCLRESP EGDTRGRVHE FDTETKRVSN MPEGHILADD QSQDNGTSAT RQNGSGASDS 480 SLLHKTNKPP ERRRGKAEKT ISLDVLQQYF SGSLKNAAKS LGVCPTTMKR ICRQHGISRW 540 PSRKINKVNR SLSKLKQVIE SVQGSDAAFN LTSITGPLPI PVGPSSDSLN IEKVTQSKVA 600 DLSNPADGDR DSSLQKSLEN DGHFGILMAQ QGFMDNNNSK NHLKMMVILQ GFMDNNNDAQ 660 LEADKASHSR SSSGEGSINS RTSEGSCQGS PANQTFVCKP IASTFAEPQI NPEEFTKEPF 720 QEPQLPLSRM LIEDSGSSKD LKNLFTSAAD QPFFATPTDQ PFFAPPSNLR SMKHSGTVTI 780 KASFKEDIVR FRFPCSGSVT VLKDEVAKRL RMDVGMFDIK YLDDDHEWVK LACNADLEEC 840 MEISRHSGTH VIRLLVSDIA AHLGSSCGSS EKTSAGFGLG GVVFSLKHPT IPSDSVGPIV 900 LICTLEHIGF MRGTNRESRE GVLFVRNGFD TVIPSREFGQ PNIPVNKWPY AKHYPEFANF 960 ATFGSRQDKE ANWRTSSWKD EWLVFSTMIG GSKTCVSVTA AAFQHGGPAS VKSGESTAIG 1020 EPKYQIPFGI PKGEAVKTPH LIFKNRNISS ISENTLHFKG TRVNRLGKRN MGVQFNLVCA 1080 ATNTKVKLGS INKS

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence Send to blast

MGNSDTTSKR VEQINHKWQL HLSLDGDGTD NSSLFKERLT QALRYFKDST DQHLLVQVWA  60
PVKNGDRYVL TTSGQPFVLD HQSIGLLQYR AVSMMYMFSV DGDNAGELGL PGRVYKQKVP  120
EWTPNVQYYS SNEYPRLNHA ISYNVHGTVA LPVFDPSAQS CIAVVELIMT SKKINYACEV  180
DKVCKALEAV NLKSTEIFDH PNVQICNEGR QTALVEILEI LTVVCEEHKL PLAQTWVPCK  240
YRSVLAHGGG LKKSCLSFDG SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQRGQGV  300
PGKAFISHKP CFSKDIRQFC KLEYPLVHYA RMFGLAGCLA ICLQSCYTGH DDYILEFFLP  360
PDCIDEDDQN ALLESILTRM KKCLRSLKVV GDRDLNGVSL QLGNVLKIEN EEFKKDVQFD  420
NSEGCLRESP EGDTRGRVHE FDTETKRVSN MPEGHILADD QSQDNGTSAT RQNGSGASDS  480
SLLHKTNKPP ERRRGKAEKT ISLDVLQQYF SGSLKNAAKS LGVCPTTMKR ICRQHGISRW  540
PSRKINKVNR SLSKLKQVIE SVQGSDAAFN LTSITGPLPI PVGPSSDSLN IEKVTQSKVA  600
DLSNPADGDR DSSLQKSLEN DGHFGILMAQ QGFMDNNNSK NHLKMMVILQ GFMDNNNDAQ  660
LEADKASHSR SSSGEGSINS RTSEGSCQGS PANQTFVCKP IASTFAEPQI NPEEFTKEPF  720
QEPQLPLSRM LIEDSGSSKD LKNLFTSAAD QPFFATPTDQ PFFAPPSNLR SMKHSGTVTI  780
KASFKEDIVR FRFPCSGSVT VLKDEVAKRL RMDVGMFDIK YLDDDHEWVK LACNADLEEC  840
MEISRHSGTH VIRLLVSDIA AHLGSSCGSS EKTSAGFGLG GVVFSLKHPT IPSDSVGPIV  900
LICTLEHIGF MRGTNRESRE GVLFVRNGFD TVIPSREFGQ PNIPVNKWPY AKHYPEFANF  960
ATFGSRQDKE ANWRTSSWKD EWLVFSTMIG GSKTCVSVTA AAFQHGGPAS VKSGESTAIG  1020
EPKYQIPFGI PKGEAVKTPH LIFKNRNISS ISENTLHFKG TRVNRLGKRN MGVQFNLVCA  1080
ATNTKVKLGS INKS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919188

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085359	0.0	BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814939.1	0.0	protein NLP3 isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3HZV8	0.0	A0A2S3HZV8_9POAL; Uncharacterized protein
STRING	Si000216m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein