PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462919140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Dof | ||||||||
Protein Properties | Length: 167aa MW: 18444.7 Da PI: 8.8261 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 69.7 | 4.4e-22 | 1 | 35 | 26 | 60 |
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++qPryfCkaCrryWt+GG+lrnvP+Ggg+ knk+ 462919140 1 MKQPRYFCKACRRYWTQGGSLRNVPIGGGCHKNKR 35 68*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 18.184 | 1 | 35 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-12 | 1 | 35 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-17 | 2 | 35 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKQPRYFCKA CRRYWTQGGS LRNVPIGGGC HKNKRGSPSF LPPSSSSSSS SSINEQLQQH 60 LVPASSTAGF PSVLPTFWED FMEDNTSLLL DVTSSDLLPL TSNMQDLEGF NYESYLFDDM 120 SPTQAQAADT NRSSKAPIIL AFQRSPTNVA RKAHVFAYVG PKTEKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462919140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105400.2 | 5e-20 | dof zinc finger protein PBF | ||||
Swissprot | O24463 | 5e-21 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | B2LUU1 | 2e-19 | B2LUU1_MAIZE; Dof-type zinc finger protein (Fragment) | ||||
STRING | GRMZM2G146283_P01 | 2e-19 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37779 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-17 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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