PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462918993 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 45488.8 Da PI: 4.9968 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.8 | 1.9e-31 | 33 | 176 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksg 81 lp+Gf+F P+d+el+ ++L++k + + + +e +i+e +i++++P++Lp +k++ + yfF k +++y g+rk+r+ k+ 462918993 33 LPVGFKFVPSDSELL-QHLEEKSNLPNsvssvhN--KEfipTIEEPdGICYTHPKNLP-GIKTDGSTSYFFYKISNAYGCGHRKRRKidvgytvsnDKKF 128 79*************.889999776665666432..233324777656**********.778889999******************85666665544466 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +W++tgk+kev++++g +g kk+Lv+y g + +g+kt+Wvmh+y+l 462918993 129 RWHKTGKSKEVYDENGVRKGWKKILVLYVGsVKGRGSKTNWVMHQYHL 176 6***************************8856889***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-33 | 26 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.327 | 33 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-14 | 34 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MILEVAISHE ACQPWIIDWK GIVEKVPTVW PKLPVGFKFV PSDSELLQHL EEKSNLPNSV 60 SSVHNKEFIP TIEEPDGICY THPKNLPGIK TDGSTSYFFY KISNAYGCGH RKRRKIDVGY 120 TVSNDKKFRW HKTGKSKEVY DENGVRKGWK KILVLYVGSV KGRGSKTNWV MHQYHLGVDE 180 AEKDGQLVVS KVFYQLGSKQ IDKSEMDISL VEHDVSTVKV DPRTPKIDPP QPHRPNNSPC 240 ETEQYTSPFP LDQGEAESST SNFCVKDEDK YPSRYAGLSQ IAEDPAQPDI DEPSVTGMQT 300 LLSESTSGSG VQTFLDKAPQ ASTHVNEPDA GASSWFGRRG FESSVQVTLD PTLSNGVTEN 360 CLQGPMNDGL PSLDNNILSP NGPPAEYDTL ADTGSVSQDT LAWLEGILAS DA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462918993 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703093.2 | 7e-98 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 8e-57 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368RVE7 | 2e-96 | A0A368RVE7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ga01597.1.p | 4e-96 | (Panicum virgatum) | ||||
STRING | Si012740m | 1e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-59 | NAC family protein |