PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462918310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 320aa MW: 35047.5 Da PI: 4.5017 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 24 | 68 | 2 | 50 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +ykGVr++k +grWv+eIr p++ r r++lg+++t+e+Aa+a +aa 462918310 24 KYKGVRRRK-WGRWVSEIRLPNS---RDRIWLGSYDTPEQAARAFDAAS 68 8*****998.**********933...5*******************996 PP | |||||||
2 | AP2 | 54.1 | 4e-17 | 277 | 319 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +ykGVr++k +grWvAeIr p++ r r++lg+++t+e+Aa+a +a 462918310 277 KYKGVRRRK-WGRWVAEIRLPNS---RDRIWLGSYDTPEKAARAFDA 319 8*****998.**********933...5*****************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-21 | 23 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-15 | 24 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-17 | 24 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.15E-19 | 24 | 65 | No hit | No description |
PROSITE profile | PS51032 | 19.019 | 24 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-11 | 24 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-21 | 276 | 319 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-15 | 277 | 319 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-12 | 277 | 319 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 277 | 320 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.19E-20 | 277 | 319 | No hit | No description |
Pfam | PF00847 | 3.7E-11 | 277 | 319 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
LPNAAPSPPA GEQDGRSSEE EERKYKGVRR RKWGRWVSEI RLPNSRDRIW LGSYDTPEQA 60 ARAFDAASEV YAAAASHAHN NNKATAATEA PDSDAVFTSR GRSLAAARTS APLQVSAERM 120 MDWTTEMVAN PPPLFSPTVV GSHAHLTLTA AATDVDMYED ETAACCPGLW SFDCEHGTNV 180 ANTSNPGQFD TSVAESSGTK PTEEEARIIK EAIDLAVEKL LVECANNVIA EDSVVEGEEP 240 ATLVVAEVES PIPPLTMTDN GDQEEQDGRS SEEEERKYKG VRRRKWGRWV AEIRLPNSRD 300 RIWLGSYDTP EKAARAFDAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 284 | KGVRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462918310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 4e-36 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966651.1 | 3e-49 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | K3Y302 | 6e-48 | K3Y302_SETIT; Uncharacterized protein | ||||
STRING | Si008587m | 1e-48 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 6e-23 | ERF family protein |