PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462917819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 214aa MW: 24291.2 Da PI: 11.0723 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.4 | 1.7e-08 | 84 | 134 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 r+++++gr++A+++d s+n ++k+ g ++ ++ Aa+a++ a++k++g 462917819 84 RRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEDAAARAYDLAALKYWG 134 89*************8888888775555599***99*************98 PP | |||||||
2 | AP2 | 28.2 | 4.9e-09 | 177 | 211 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 s+y+GV +++ +grW+A+I + g +k+ +lg++ t 462917819 177 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYVT 211 89****99**********99966...3.6********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.135 | 49 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-4 | 84 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-11 | 84 | 144 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-12 | 84 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-9 | 85 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-5 | 177 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-5 | 177 | 211 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-5 | 178 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.822 | 178 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAKPRKNSTA AAAAANSNSA GAGDVGVRVK PKRTRKSVPR ESPSQRSSVY RGVTRYVQRR 60 SNQSTSQPWP GINHSLMITR LIARRHRWTG RFEAHLWDKN SWNESQNKKG KQGAYDDEDA 120 AARAYDLAAL KYWGPDTILN FPASAYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR 180 GVARHHHNGR WEARIGRVFG NKYLYLGTYV TSVR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462917819 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039632 | 1e-123 | BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds. | |||
GenBank | BT055111 | 1e-123 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. | |||
GenBank | KJ727588 | 1e-123 | KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 4e-99 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 9e-75 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | J3MXL3 | 1e-97 | J3MXL3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G17420.1 | 2e-98 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 6e-72 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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