PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917762
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 322aa    MW: 34309.4 Da    PI: 10.2026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917762genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-067294123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ Cgk F r  nL+ H r H
  462917762 72 YVCEVCGKGFQRDQNLQLHRRGH 94
               9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-67194No hitNo description
Gene3DG3DSA:3.30.160.602.8E-67294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00817294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8227294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035544114144IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-6144159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLKDLAAIQQ QQQVGAEENM SNLTSASGDQ ASVSSHPLPP PAKKKRSLPG NPDPDAEVIA  60
LSPKTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL KQRNPKEALR KKVYVCPEAG  120
CVHHDPARAL GDLTGIKKHF SRKHGEKRWR CERCGKRYAP AGLTFGSTFS PSSSATAHMS  180
ATALLQKAAQ MGSTLSRPSN QGQMAPTHST ATTNVATAGS APVPATSNVT TSSGLKFGPA  240
PHHFGSVDNE RADRRGETAG NNVTGGGNDG LTRDFLGLRA FSHGDILSMA GFDPCMSSAS  300
SAAAAAYEQH GHHHQSGKPW HA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198111KLKQRNPKEALRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.11e-103protein indeterminate-domain 7
TrEMBLA0A0D3EKM21e-102A0A0D3EKM2_9ORYZ; Uncharacterized protein
TrEMBLI1NL361e-102I1NL36_ORYGL; Uncharacterized protein
STRINGORGLA01G0057600.11e-103(Oryza glaberrima)
STRINGOBART01G06050.11e-103(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.15e-78indeterminate(ID)-domain 11