PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917501
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 271aa    MW: 30155 Da    PI: 9.085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917501genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.4e-33241661128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 
                lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+          + 
  462917501  24 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhseeedgGGET 118
                799************.99****999985665442...133333665557**********.555666688******************8455554443377 PP

        NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +W++tgk+++v+s +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  462917501 119 RWHKTGKTRPVMS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 166
                8************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3817185IPR003441NAC domain
PROSITE profilePS5100532.7424185IPR003441NAC domain
PfamPF023655.5E-1525166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCPSCGRRAQ YEQEPTTIQD LPGLPAGVKF DPTDQELLEH LEGKARPESR KLHPLVDEFI  60
PTIEGENGIC YTHPERLPGV SKDGLVRHFF HRPSKAYTTG TRKRRKVHSE EEDGGGETRW  120
HKTGKTRPVM SNGRPRGYKK ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS  180
KVFFQTQPRQ CGSNTTAMAK VPAGAAAINN PVVADGHLQG GTVVLREVNN VAAEFYNPAM  240
LGYGQGVPNN RADGHFMPNF AVHAARASFG P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009830.0AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961226.11e-152NAC domain-containing protein 73
SwissprotO494591e-113NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR31e-155A0A109PNR3_BAMEM; NAC1
STRINGSi022710m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]