PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462917456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30649.9 Da PI: 9.5213 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ 462917456 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 101.1 | 1.6e-33 | 95 | 182 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++s++qe+++Lk++ e+Lqr+qRh+lGedL++L++keLq+Le+qLe +l++ R+kK+++++eq++el++ke++l e nk+L++k++ 462917456 95 GESQSWHQEMSRLKAKFESLQRSQRHMLGEDLGPLNIKELQKLEKQLEYALSQARQKKTQIMMEQVDELRRKERQLGELNKQLKNKVA 182 5689*********************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-31 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-40 | 2 | 87 | No hit | No description |
PRINTS | PR00404 | 8.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.2E-30 | 96 | 181 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.318 | 97 | 187 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048437 | Biological Process | floral organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA 60 GYGPTALLDR MVNKTLEKYH DCCYNAQGSN TSFGGESQSW HQEMSRLKAK FESLQRSQRH 120 MLGEDLGPLN IKELQKLEKQ LEYALSQARQ KKTQIMMEQV DELRRKERQL GELNKQLKNK 180 VALLEAEGCS SYKAAQTSWN PDATVSVVND RALSVPNHPG AATDCEPTLQ IGCQQFAAPE 240 AAAIPRSERE RETLKVPRIL EFKSQNSKDN V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00315 | DAP | Transfer from AT2G45650 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462917456 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB007505 | 6e-78 | AB007505.1 Triticum aestivum TaMADS#12 mRNA for MADS box transcription factor, complete cds. | |||
GenBank | AM502873 | 6e-78 | AM502873.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM9B (WM9B gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824169.1 | 1e-135 | MADS-box transcription factor 17-like | ||||
Swissprot | Q7XUN2 | 1e-117 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A2S3I9M9 | 1e-134 | A0A2S3I9M9_9POAL; Uncharacterized protein | ||||
STRING | Si010898m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-86 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|