PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917412
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 286aa    MW: 31029.4 Da    PI: 5.0593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917412genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.63.3e-2542122579
                -..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
         B3   5 ltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                ++++dv+k++rlv+pk+ ae++       gg+ e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+
  462917412  42 FMTADVGKLNRLVIPKQQAEKYfpldaaaGGN-EKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKHLVAGDT 122
                799*************************7555.5788********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.4E-1238144IPR003340B3 DNA binding domain
PROSITE profilePS5086311.91438144IPR003340B3 DNA binding domain
PfamPF023622.6E-2242122IPR003340B3 DNA binding domain
SuperFamilySSF1019366.15E-2342122IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-2143122No hitNo description
Gene3DG3DSA:2.40.330.104.7E-2845122IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDQQFSSSSS RFSKEEDEEE EPEHEEEEEE DDEEASPREI PFMTADVGKL NRLVIPKQQA  60
EKYFPLDAAA GGNEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKHLVAG  120
DTGLDFRNVN AAAPARQLLF FGSAGMPPPG PMLPPAPPTP THHITTVLQP SPAATSAGQL  180
PMVLDSVPLV NSPTATSKRV RLFGVNLDNP HPGGAAGESS SSHDANALSL RMPGWQRPAP  240
ALRFLELPPH QQQHGATGGV ESSAASSPSS SSSSKREAHS SLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-37451221590B3 domain-containing transcription factor NGA1
5os9_B3e-37451221590B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269632e-96KJ726963.1 Zea mays clone pUT3663 ABI3VP1 transcription factor (ABI2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691551.13e-89PREDICTED: B3 domain-containing protein Os04g0581400-like
SwissprotQ8LMR91e-43Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0KUB92e-92A0A0E0KUB9_ORYPU; Uncharacterized protein
STRINGOPUNC04G20430.14e-93(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]