PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916992
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 507aa    MW: 56422.9 Da    PI: 4.7302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916992genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16154201148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l d+v+  G g+W+ +    g++R++k+c++rw ++l
        462916992 154 KGPWTPEEDKRLRDYVRANGEGNWNQVRINAGLNRCGKSCRLRWSNHL 201
                      79*******************************************996 PP
2Myb_DNA-binding32.12.7e-10242278846
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      E e++++ +  +G++ W++ a+ ++ gRt++++k++w++
        462916992 242 EVEKILRMHMTWGNK-WAKMAALLP-GRTDNEIKNYWNT 278
                      66999**********.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.137149205IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-22149205IPR009057Homeodomain-like
SMARTSM007173.1E-14153203IPR001005SANT/Myb domain
SuperFamilySSF466893.15E-23154205IPR009057Homeodomain-like
PfamPF002493.0E-15154201IPR001005SANT/Myb domain
CDDcd001672.83E-10156201No hitNo description
SuperFamilySSF466891.2E-6191235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-9206235IPR009057Homeodomain-like
SMARTSM007171.4E-8206282IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-16242281IPR009057Homeodomain-like
CDDcd001672.67E-8242280No hitNo description
PfamPF002494.6E-9242278IPR001005SANT/Myb domain
PROSITE profilePS512949.601242284IPR017930Myb domain
SuperFamilySSF466893.15E-23252281IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
AAAAATTAAA LQTPKPSRVS SFPFHRSHLI PSAAAASFPI DPIRPALPLH VAIWSIVRSW  60
EFKSSESEGS VAAPRDRKMM VKMEEELASE LPPTVLADPM EHYSALHSPV DGGGDDYPYD  120
YDYDEDEEEE DDEETDDEGD GYGARRSGEP PLKKGPWTPE EDKRLRDYVR ANGEGNWNQV  180
RINAGLNRCG KSCRLRWSNH LRPDLKKGPF DDDEVEKILR MHMTWGNKWA KMAALIFLCS  240
CEVEKILRMH MTWGNKWAKM AALLPGRTDN EIKNYWNTRL KRHQRAGLPI YPEYLVSQAS  300
NQDMNFETPE ELCGAKRPNE SSQGSVLEIH DLMYDYFDHE TFMKLMSNGD LPSSSLVDSN  360
GLPVDAVNPL KRRISTDSIA SDYNGSLPFL QIPDESENAG SSMSFNYGMT ENQLAPLGAA  420
IISGHPIFDG NPSTSWTTLR PVKMELPSVQ YSNYGHTNAW VCDGPSGSPI EQANTLESPG  480
SLKSESISPQ NAGLDAIVHM GDDPVRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-221482821106B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812567.11e-104transcription factor GAMYB-like isoform X3
TrEMBLA0A2S3HID21e-103A0A2S3HID2_9POAL; Uncharacterized protein
STRINGPavir.Da00534.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-49myb domain protein 101