PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462916399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SRS | ||||||||
Protein Properties | Length: 179aa MW: 18404 Da PI: 6.2235 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 102.6 | 7.1e-32 | 9 | 110 | 61 | 154 |
DUF702 61 skaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 ++a+++a ++ask++r l ++q+++s+t++s+a+++++++t+s lP++v+++avf+cvrv+s+ddge+e+aYq+ v+i+GhvfkG+Lydq 462916399 9 ATATTAAVASASKKPRLL--SSQTTTSHTSTSNATTPRSFDTTSshqdasfrdnLPRQVRAPAVFKCVRVTSIDDGEDEYAYQAMVTINGHVFKGFLYDQ 106 333444466777777765..89999999*************99999****************************************************** PP DUF702 151 Glee 154 G+++ 462916399 107 GVDD 110 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.4E-28 | 12 | 109 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 8.4E-29 | 61 | 108 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGPASSSPAT ATTAAVASAS KKPRLLSSQT TTSHTSTSNA TTPRSFDTTS SHQDASFRDN 60 LPRQVRAPAV FKCVRVTSID DGEDEYAYQA MVTINGHVFK GFLYDQGVDD GRHASTSNDD 120 STAGMPNMSE LHLGGASASG PGSSGVREGG SSMLPTELYG GGGGGQHMIG GSSYCNTMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462916399 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858781 | 1e-110 | HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818814.1 | 6e-76 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 6e-36 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A3L6SLU1 | 4e-78 | A0A3L6SLU1_PANMI; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
STRING | Pavir.Eb03954.1.p | 1e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-29 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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