PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916357

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 223aa MW: 24481.4 Da PI: 6.0854

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916357	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.5	7e-11	49	71	34	56
HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRakek 56 A+ lgL+ rqV +WFqNrRa++k 462916357 49 ARALGLQPRQVAIWFQNRRARWK 71 889*******************9 PP
2	HD-ZIP_I/II	85.1	9.7e-28	47	107	31	91
HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + ar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L +++++L++e+ 462916357 47 QRARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLDAVKADNDALLSHNKKLQAEI 107 569*******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	3.4E-8	49	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-11	49	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.451	49	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-9	49	82	IPR009057	Homeodomain-like
CDD	cd00086	8.88E-10	49	74	No hit	No description
Pfam	PF02183	1.0E-14	73	112	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MYDVGGGADE VNGGGANEDE LWXXXXXXXX XXXXXXXXXX XXXXXLQRAR ALGLQPRQVA 60 IWFQNRRARW KTKQLEKDYD VLKRQLDAVK ADNDALLSHN KKLQAEILAL KGGREAGSEL 120 INLNKETEAS CSNRSENSSE INLDISRTPP SEGAMDPPPP HQHAGNGGGG SMIPFYPSVG 180 RPAGGVDFDQ LLHSSSGPKM EPHGNGGVHQ APETPWADQQ HFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	73	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916357

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359041	1e-140	AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBank	AK359747	1e-140	AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBank	AK366245	1e-140	AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
GenBank	AK367318	1e-140	AK367318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054L16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796010.1	9e-87	homeobox-leucine zipper protein HOX21-like isoform X2
Swissprot	Q8S7W9	2e-79	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	A0A3L6SDB5	1e-100	A0A3L6SDB5_PANMI; Uncharacterized protein
STRING	Pavir.Ia04323.1.p	1e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-48	HD-ZIP family protein