PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916327
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 486aa    MW: 52727.8 Da    PI: 6.9558
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916327genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.4e-28179232155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  462916327 179 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 232
                79*******************.********************************8 PP
2Response_reg302.7e-11691232175
                   TTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS
  Response_reg  21 egyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75 
                     + +v+++ +++ al +l+e++  +D+i+ D+ mp+mdG++ll++   e  +lp+i
     462916327  69 RAV-IVTTCPQATRALSMLRENRrgFDVIISDVHMPDMDGFRLLEQVGLEM-DLPVI 123
                   455.899************99999*********************985433.56666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-191540No hitNo description
PROSITE profilePS5011018.08617166IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.38E-919130No hitNo description
SuperFamilySSF521723.27E-1065123IPR011006CheY-like superfamily
PfamPF000723.9E-770123IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.5E-1972123No hitNo description
PROSITE profilePS5129411.674176235IPR017930Myb domain
SuperFamilySSF466892.87E-20176236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-30176237IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25179232IPR006447Myb domain, plants
PfamPF002495.0E-7181230IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAAAAEARGA DFPVGMKVLV VDDDPTCLLV LKKMLDECKY DGEKLLPALL FFPPRFRCFR  60
DLFVFLSLRA VIVTTCPQAT RALSMLRENR RGFDVIISDV HMPDMDGFRL LEQVGLEMDL  120
PVISSLDDTD RNRLTNNDNE YASSANDVGD GSWKSQKKKR DKEEDEGDEN GDPSSTSKKP  180
RVVWSVELHQ QFVNAVNHLG IDKAVPKKIL ELMNVPGLTR ENVASHLQKF RLYLKRIAQH  240
HAGMAHPFVP SASNAKVAPL GGLELQALAA SGQIPPQALA ALQDELLGRP TSSLALPGRD  300
QSSLRLAAIK GNKPHGEREI AFGQPIYKCQ NNAYGAFPQS SPTMGGMPSF AGWPSNKHGM  360
TDSGNTLGSL NNSQNSTMLL QELQQQPDSL LSGTLHSIDV KPSGIVMPSQ SLNTFPASDG  420
LSPHQNPLST DDVSGGWSLQ NIDSYGSPLG PGQSGSNVAL GKLPDQGRGR NHGFVGKEFA  480
TLFRVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-24175238164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLC5WSM40.0C5WSM4_SORBI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-44response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]