PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916315

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 426aa MW: 47350.1 Da PI: 4.7631

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916315	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	93.1	3.2e-29	53	155	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.......TEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.......gFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++ +isw ++g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+Y F+ ++ + ++ we++++ F k++k 462916315 53 FLTKVYDMVSDPATDAVISWGASGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYvrflgplCFHGFRKVD------QDRWEWANEGFVKDQK 143 9********************************************************6555444244444444......447********* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++ikrkk++ 462916315 144 HLLKTIKRKKKT 155 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.0E-47	49	152	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.13E-31	49	152	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.5E-33	50	152	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.2E-12	53	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.5E-28	53	152	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-12	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-12	104	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGSKKRTPQP AAVVAGSPAA GEVPGDVGAP PAGKGPAPAP VGVVPKPPDV APFLTKVYDM 60 VSDPATDAVI SWGASGGSFV IWDSHAFERD LLPRHFKHNH FTSFIRQLNT YVRFLGPLCF 120 HGFRKVDQDR WEWANEGFVK DQKHLLKTIK RKKKTSQETP DPPQAPVKTP PGTENIEIGN 180 YGGLEKEVET LKRDKTLLMQ QLVDLRQYQQ SSSLELQNLI QRLHVMEKNQ QQMMALLAIV 240 VSNPDFLTQL VQQQHRSSWC YDDGSKKRRF HALEQGPVAE QETSGAGAQI IQYLPSVAEI 300 SNQVMPVNGC SNLSQTVSSP ALAMPMNTEP TSDNADTLGS TRNNIFTDSS AQHEVDDMLL 360 FVDDLESMLQ LDDQDCQVEE QQDNQMEAQQ NCEVEPPLTI EDYPNFELDC QMGAQQNCQN 420 PQYGIH

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGSKKRTPQP AAVVAGSPAA GEVPGDVGAP PAGKGPAPAP VGVVPKPPDV APFLTKVYDM  60
VSDPATDAVI SWGASGGSFV IWDSHAFERD LLPRHFKHNH FTSFIRQLNT YVRFLGPLCF  120
HGFRKVDQDR WEWANEGFVK DQKHLLKTIK RKKKTSQETP DPPQAPVKTP PGTENIEIGN  180
YGGLEKEVET LKRDKTLLMQ QLVDLRQYQQ SSSLELQNLI QRLHVMEKNQ QQMMALLAIV  240
VSNPDFLTQL VQQQHRSSWC YDDGSKKRRF HALEQGPVAE QETSGAGAQI IQYLPSVAEI  300
SNQVMPVNGC SNLSQTVSSP ALAMPMNTEP TSDNADTLGS TRNNIFTDSS AQHEVDDMLL  360
FVDDLESMLQ LDDQDCQVEE QQDNQMEAQQ NCEVEPPLTI EDYPNFELDC QMGAQQNCQN  420
PQYGIH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-22	34	152	9	129	Heat shock factor protein 1
5d5v_B	7e-22	34	152	9	129	Heat shock factor protein 1
5d5v_D	7e-22	34	152	9	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916315

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468244.1	0.0	heat stress transcription factor A-9
Refseq	XP_021306702.1	0.0	heat stress transcription factor A-9
Swissprot	Q10PR4	1e-161	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	A0A1E5WFT3	0.0	A0A1E5WFT3_9POAL; Heat stress transcription factor A-9
STRING	Sb01g042370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	8e-61	heat shock factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]