PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462916228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26328.2 Da PI: 8.4863 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.2 | 1.2e-24 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA ELS+LCda++ vi+fs++gk+ye + 462916228 10 RIENPVHRQVTFCKRRMGLLKKARELSILCDADIGVIVFSPHGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 61.2 | 4.1e-21 | 82 | 175 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++++ + qqe++ L +ei+ Lq+ +R + Ge d+++++l eLq Le++Le + +iR++K++++ ++ie l++ke +l+ +n L++++ 462916228 82 SEHNKHQFKAIQQEVSALTREIDFLQKGLRYMHGEkDINQMNLDELQALESNLEIWVHNIRTQKMQIMSREIELLRNKEGMLKAANDILQERIT 175 33566777899***********************868*****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.45E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.044 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.22E-37 | 2 | 73 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-22 | 85 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.897 | 89 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSILCD ADIGVIVFSP HGKIYELATN 60 GNMQALIERY GSTYAGKHGE SSEHNKHQFK AIQQEVSALT REIDFLQKGL RYMHGEKDIN 120 QMNLDELQAL ESNLEIWVHN IRTQKMQIMS REIELLRNKE GMLKAANDIL QERITEQSGI 180 LDVSSNVIIP QVHVPYQLTM ENNRAEWDSG CQKQCDKTTS ACAIPTNHGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462916228 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824407.1 | 1e-115 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 3e-76 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 3e-76 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2T7CVB8 | 1e-114 | A0A2T7CVB8_9POAL; Uncharacterized protein | ||||
STRING | Si012632m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-61 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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