PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916198
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 649aa    MW: 72370.8 Da    PI: 6.8236
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916198genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24125225198
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++ +++ae++      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+  + +++el+v
  462916198 125 FCKTLTASDTSTHGGFSVLRRHAEDClppldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFM--RGDNGELRV 221
                99*****************************7556666.59************************************************..3489999** PP

                EEE- CS
         B3  95 kvfr 98 
                +v+r
  462916198 222 GVRR 225
                **97 PP
2Auxin_resp99.93.4e-33251336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                 a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt+++v     ++ + W +S WrsLk
   462916198 251 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIIDVGSlpaMSKSLWADSDWRSLK 336
                 789*************************************************************998622267778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-45110254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41122240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-22123225No hitNo description
PROSITE profilePS5086311.688125227IPR003340B3 DNA binding domain
PfamPF023628.0E-22125225IPR003340B3 DNA binding domain
SMARTSM010198.9E-22125227IPR003340B3 DNA binding domain
PfamPF065071.7E-31251336IPR010525Auxin response factor
PfamPF023095.3E-7543585IPR033389AUX/IAA domain
PROSITE profilePS5174511.64546649IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAAAMDVASH GTSGMPNDAL YRELWHACAG PLVTVPRQGE RVYYFPQGHM EQLEASTHQQ  60
LDQYLPMFNL PSKILCRVVN VELRAEADSD EVYAQIMLQP EADQSELTSL DPEPQELEKC  120
TVHSFCKTLT ASDTSTHGGF SVLRRHAEDC LPPLDMSQNP PCQELVAKDL HGTEWHFRHI  180
FRGQPRRHLL TTGWSVFVSS KRLVAGDAFI FMRGDNGELR VGVRRLMRQV NNMPSSVISS  240
HSMHLGVLAT ASHAISTGTL FSVFYKPRTS RSDFIVSVNK YLEAKKQKIS VGMRFKMRFE  300
GDEAPERRFS GTIIDVGSLP AMSKSLWADS DWRSLKVQWD EPSSILRPDR ISPWEVEPLD  360
ASNPQAPQPP LRNKRARPPA SPSIVPELPS AFGPWKSPAE PTRTLSFSDP QRARELFPSI  420
PASTFSSSSN IGFNTMNESS MLNNQFYWSV RDSRAESCAA STNKVTVEKK RESGSAGCRL  480
FGIEICSAEE EALPAVTAPG LDYDRTAASV DLSSDKLSHP SDVNNCDGPA TSSERSLLES  540
QSRQMRSCTK VIMQGMAVGR AVDLTKLSSY SELYQKLEEM FDIHGELDSA LKKWQVIRSL  600
EVRNPFEFCG MVKRIYIYTY EEAKQLAPKS KIPVNSDSSK LSTVNSPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033612357Auxin response factor 1
4ldw_A0.033612357Auxin response factor 1
4ldw_B0.033612357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823850.10.0auxin response factor 9-like
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A2T7CVB00.0A0A2T7CVB0_9POAL; Auxin response factor
STRINGPavir.Gb01617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]