PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916120
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 341aa    MW: 37769.5 Da    PI: 8.3099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916120genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.81.5e-38101331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                lppGfrFhPtd+elv++yL++k++g +l +  vi+evd+yk++Pw+Lp ++   + +     +++++ +a+   +nra+ +gyWkatg dk+v s   + 
  462916120  10 LPPGFRFHPTDDELVNYYLCRKCAGMPLAA-PVIAEVDLYKFDPWQLPgTR--RRWEGRRSGTSSRRVTASTPTPNRAAGTGYWKATGADKPVGS--PRP 104
                79*************************999.89***************322..222333445566666777889*******************99..779 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                v +kk Lvfy g+ pkg+kt+W+mheyrl
  462916120 105 VAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-476163IPR003441NAC domain
PROSITE profilePS5100547.30610163IPR003441NAC domain
PfamPF023655.1E-2111133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDCCGGALQL PPGFRFHPTD DELVNYYLCR KCAGMPLAAP VIAEVDLYKF DPWQLPGTRR  60
RWEGRRSGTS SRRVTASTPT PNRAAGTGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK  120
GVKTNWIMHE YRLADVDRSA AARKRTNNAL RLDDWVLCRI YNKKGVIERY DTVDAPAAAA  180
GGRGGAAAMK VEMPDYGYYD YDMDTPAAEM LCFDRPFPSP PPDQPEPEME TELSADRDDS  240
NNSLPRNNVH TDNSSCGSEH VLSPSPDLPD RDHAESQPGC GWFGVDWGGA DDGFVVDDGA  300
RRPRRRLAQR HVRVPAEAVL KRPPPPLVRF HRSCRSFTLA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-57816913174Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699601e-155BT069960.1 Zea mays full-length cDNA clone ZM_BFb0347F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308992.11e-123uncharacterized protein LOC100384376
RefseqXP_002450434.11e-123NAC domain-containing protein 71
SwissprotQ53NF71e-116NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A1X7YF051e-121A0A1X7YF05_MAIZE; Uncharacterized protein
TrEMBLA0A1Z5RGY21e-121A0A1Z5RGY2_SORBI; Uncharacterized protein
TrEMBLA0A3L6F2B31e-121A0A3L6F2B3_MAIZE; NAC domain-containing protein 71
STRINGSb05g005450.11e-122(Sorghum bicolor)
STRINGGRMZM2G123667_P021e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-74NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]