PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462916120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 37769.5 Da PI: 8.3099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123.8 | 1.5e-38 | 10 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtd+elv++yL++k++g +l + vi+evd+yk++Pw+Lp ++ + + +++++ +a+ +nra+ +gyWkatg dk+v s + 462916120 10 LPPGFRFHPTDDELVNYYLCRKCAGMPLAA-PVIAEVDLYKFDPWQLPgTR--RRWEGRRSGTSSRRVTASTPTPNRAAGTGYWKATGADKPVGS--PRP 104 79*************************999.89***************322..222333445566666777889*******************99..779 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 v +kk Lvfy g+ pkg+kt+W+mheyrl 462916120 105 VAIKKALVFYAGKPPKGVKTNWIMHEYRL 133 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-47 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.306 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-21 | 11 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDCCGGALQL PPGFRFHPTD DELVNYYLCR KCAGMPLAAP VIAEVDLYKF DPWQLPGTRR 60 RWEGRRSGTS SRRVTASTPT PNRAAGTGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK 120 GVKTNWIMHE YRLADVDRSA AARKRTNNAL RLDDWVLCRI YNKKGVIERY DTVDAPAAAA 180 GGRGGAAAMK VEMPDYGYYD YDMDTPAAEM LCFDRPFPSP PPDQPEPEME TELSADRDDS 240 NNSLPRNNVH TDNSSCGSEH VLSPSPDLPD RDHAESQPGC GWFGVDWGGA DDGFVVDDGA 300 RRPRRRLAQR HVRVPAEAVL KRPPPPLVRF HRSCRSFTLA N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-57 | 8 | 169 | 13 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 305 | RRPRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462916120 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069960 | 1e-155 | BT069960.1 Zea mays full-length cDNA clone ZM_BFb0347F20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308992.1 | 1e-123 | uncharacterized protein LOC100384376 | ||||
Refseq | XP_002450434.1 | 1e-123 | NAC domain-containing protein 71 | ||||
Swissprot | Q53NF7 | 1e-116 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | A0A1X7YF05 | 1e-121 | A0A1X7YF05_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A1Z5RGY2 | 1e-121 | A0A1Z5RGY2_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A3L6F2B3 | 1e-121 | A0A3L6F2B3_MAIZE; NAC domain-containing protein 71 | ||||
STRING | Sb05g005450.1 | 1e-122 | (Sorghum bicolor) | ||||
STRING | GRMZM2G123667_P02 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11804 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 8e-74 | NAC family protein |
Publications ? help Back to Top | |||
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