PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915951

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 427aa MW: 45550 Da PI: 7.9019

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915951	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.6e-40	98	158	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s 462915951 98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 158 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	94	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAECRAGAGG GDCLIKLFGK TIPVPELSAA AVGDVDKDLQ QSGSSTTEPK GQESTLQDST 60 GSPPQQGVTD TEDSSAEKNS SADQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY 120 NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAA SHFLQRVRAA LPMDPLCTSA 180 KTNGTVLSFG SGMSSLNLTE QMKHLKETLV PITRIKNRDD QSVDSCAEGG SAKAEDSKPT 240 NQTEKVEADK SANVLQHPCM NGVTMWPLSC APPLACYAPG IAIPFYPAAA AYWGCMVPGA 300 WNTPWPPHSQ SESATSPSSA SPASTKSNCF TPGKRHRDGD EDGNGKVWVP KTIRIDDADE 360 VARSSILSLI GINGDKVGKD GRGCKLASVF EEKDDAKTAT HTVINSLPFL RGNPAAISRS 420 LTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAECRAGAGG GDCLIKLFGK TIPVPELSAA AVGDVDKDLQ QSGSSTTEPK GQESTLQDST  60
GSPPQQGVTD TEDSSAEKNS SADQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY  120
NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAA SHFLQRVRAA LPMDPLCTSA  180
KTNGTVLSFG SGMSSLNLTE QMKHLKETLV PITRIKNRDD QSVDSCAEGG SAKAEDSKPT  240
NQTEKVEADK SANVLQHPCM NGVTMWPLSC APPLACYAPG IAIPFYPAAA AYWGCMVPGA  300
WNTPWPPHSQ SESATSPSSA SPASTKSNCF TPGKRHRDGD EDGNGKVWVP KTIRIDDADE  360
VARSSILSLI GINGDKVGKD GRGCKLASVF EEKDDAKTAT HTVINSLPFL RGNPAAISRS  420
LTFQEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915951

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ260456	0.0	GQ260456.2 Eleusine coracana Dof-type zinc finger protein (DOF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-50	cycling DOF factor 2